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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Gh_A13G0501 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family | GRAS | ||||||||
| Protein Properties | Length: 434aa MW: 48716.5 Da PI: 4.9917 | ||||||||
| Description | GRAS family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | GRAS | 300.2 | 5.1e-92 | 44 | 430 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl..fsevsPilkfshlt 97
++lLl+cA a++++d +laq++++ l++ as gd++qRl+a f++AL +r +r +++ ++ s + + +++++l ++++ P+++f++ +
Gh_A13G0501 44 EKLLLHCASALENNDVTLAQQVMWVLNNVASTVGDTNQRLTAWFLRALISRASRVCPTSMNFNGGSMFQ----RRLMTVTELvgYVDLIPWHRFGFCA 137
689***************************************************777777666555554....333333344559************* PP
GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl........... 181
N aI +aveg +vHi+Df+i+q++QWp+L++aLa+RpegppslRiT+ + ++ + + ee+g+rLa+fA+ +vpfef+v
Gh_A13G0501 138 SNGAIFKAVEGYGKVHILDFSITQCMQWPTLIDALAKRPEGPPSLRITVPSCRPQVpplLNVSKEEVGHRLANFAKFRDVPFEFHVKdddpclsnetf 235
************************************************9887555578889999*********************8889999888886 PP
GRAS 182 ...vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleakl 275
++ l++l+ ++L+++ +Eal++n++ l +l des + rd++L+++k+l+P+++vvv++++d++++s+ r++ +++y + fd+le+ l
Gh_A13G0501 236 stqFESLLTQLTRSQLDLRYDEALVINCQNWLRYLSDESKGNTTtVRDAFLDVIKGLNPRIIVVVDEDCDLSASSLSSRITTCFNYLWIPFDALETFL 333
6655556677799999********************9987666559**************************************************** PP
GRAS 276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
p++s++r +E +g +i+n+v eg++r+er e+ k ++r+++aGF ++p+ e++ +++k+ll +++ g+ ++ e++ lvl+Wk+++ v+++aW
Gh_A13G0501 334 PKDSRQRLEYESD-IGHKIENIVGFEGFQRTERLESGVKLSQRMNDAGFVSLPFCEDTINEVKSLLDEHA-SGWGMKREEDMLVLTWKGHNSVFATAW 429
*************.********************************************************.889999999****************** PP
GRAS 374 r 374
+
Gh_A13G0501 430 T 430
6 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50985 | 42.634 | 17 | 411 | IPR005202 | Transcription factor GRAS |
| Pfam | PF03514 | 1.8E-89 | 44 | 430 | IPR005202 | Transcription factor GRAS |
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 434 aa Download sequence Send to blast |
MKTEVRGNGG SISLQNPSLF NIPLDPITGA LKGCLGSLDG ACIEKLLLHC ASALENNDVT 60 LAQQVMWVLN NVASTVGDTN QRLTAWFLRA LISRASRVCP TSMNFNGGSM FQRRLMTVTE 120 LVGYVDLIPW HRFGFCASNG AIFKAVEGYG KVHILDFSIT QCMQWPTLID ALAKRPEGPP 180 SLRITVPSCR PQVPPLLNVS KEEVGHRLAN FAKFRDVPFE FHVKDDDPCL SNETFSTQFE 240 SLLTQLTRSQ LDLRYDEALV INCQNWLRYL SDESKGNTTT VRDAFLDVIK GLNPRIIVVV 300 DEDCDLSASS LSSRITTCFN YLWIPFDALE TFLPKDSRQR LEYESDIGHK IENIVGFEGF 360 QRTERLESGV KLSQRMNDAG FVSLPFCEDT INEVKSLLDE HASGWGMKRE EDMLVLTWKG 420 HNSVFATAWT ELED |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 5b3g_B | 2e-59 | 16 | 429 | 65 | 472 | Protein SHORT-ROOT |
| 5b3h_B | 5e-60 | 16 | 429 | 11 | 418 | Protein SHORT-ROOT |
| 5b3h_E | 5e-60 | 16 | 429 | 11 | 418 | Protein SHORT-ROOT |
| Search in ModeBase | ||||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_016674785.1 | 0.0 | PREDICTED: scarecrow-like protein 32 | ||||
| TrEMBL | A0A1U8I970 | 0.0 | A0A1U8I970_GOSHI; scarecrow-like protein 32 | ||||
| STRING | Gorai.013G072100.1 | 0.0 | (Gossypium raimondii) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM17642 | 9 | 10 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G49950.1 | 1e-124 | GRAS family protein | ||||




