PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A13G0501
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 434aa    MW: 48716.5 Da    PI: 4.9917
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A13G0501genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS300.25.1e-92444302374
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl..fsevsPilkfshlt 97 
                  ++lLl+cA a++++d +laq++++ l++ as  gd++qRl+a f++AL +r +r +++ ++    s  +     + +++++l  ++++ P+++f++ +
  Gh_A13G0501  44 EKLLLHCASALENNDVTLAQQVMWVLNNVASTVGDTNQRLTAWFLRALISRASRVCPTSMNFNGGSMFQ----RRLMTVTELvgYVDLIPWHRFGFCA 137
                  689***************************************************777777666555554....333333344559************* PP

         GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl........... 181
                   N aI +aveg  +vHi+Df+i+q++QWp+L++aLa+RpegppslRiT+ +   ++    + + ee+g+rLa+fA+  +vpfef+v            
  Gh_A13G0501 138 SNGAIFKAVEGYGKVHILDFSITQCMQWPTLIDALAKRPEGPPSLRITVPSCRPQVpplLNVSKEEVGHRLANFAKFRDVPFEFHVKdddpclsnetf 235
                  ************************************************9887555578889999*********************8889999888886 PP

         GRAS 182 ...vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleakl 275
                      ++ l++l+ ++L+++ +Eal++n++  l +l des   +   rd++L+++k+l+P+++vvv++++d++++s+  r++ +++y +  fd+le+ l
  Gh_A13G0501 236 stqFESLLTQLTRSQLDLRYDEALVINCQNWLRYLSDESKGNTTtVRDAFLDVIKGLNPRIIVVVDEDCDLSASSLSSRITTCFNYLWIPFDALETFL 333
                  6655556677799999********************9987666559**************************************************** PP

         GRAS 276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                  p++s++r  +E   +g +i+n+v  eg++r+er e+  k ++r+++aGF ++p+ e++ +++k+ll +++  g+ ++ e++ lvl+Wk+++ v+++aW
  Gh_A13G0501 334 PKDSRQRLEYESD-IGHKIENIVGFEGFQRTERLESGVKLSQRMNDAGFVSLPFCEDTINEVKSLLDEHA-SGWGMKREEDMLVLTWKGHNSVFATAW 429
                  *************.********************************************************.889999999****************** PP

         GRAS 374 r 374
                  +
  Gh_A13G0501 430 T 430
                  6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.63417411IPR005202Transcription factor GRAS
PfamPF035141.8E-8944430IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MKTEVRGNGG SISLQNPSLF NIPLDPITGA LKGCLGSLDG ACIEKLLLHC ASALENNDVT  60
LAQQVMWVLN NVASTVGDTN QRLTAWFLRA LISRASRVCP TSMNFNGGSM FQRRLMTVTE  120
LVGYVDLIPW HRFGFCASNG AIFKAVEGYG KVHILDFSIT QCMQWPTLID ALAKRPEGPP  180
SLRITVPSCR PQVPPLLNVS KEEVGHRLAN FAKFRDVPFE FHVKDDDPCL SNETFSTQFE  240
SLLTQLTRSQ LDLRYDEALV INCQNWLRYL SDESKGNTTT VRDAFLDVIK GLNPRIIVVV  300
DEDCDLSASS LSSRITTCFN YLWIPFDALE TFLPKDSRQR LEYESDIGHK IENIVGFEGF  360
QRTERLESGV KLSQRMNDAG FVSLPFCEDT INEVKSLLDE HASGWGMKRE EDMLVLTWKG  420
HNSVFATAWT ELED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B2e-591642965472Protein SHORT-ROOT
5b3h_B5e-601642911418Protein SHORT-ROOT
5b3h_E5e-601642911418Protein SHORT-ROOT
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016674785.10.0PREDICTED: scarecrow-like protein 32
TrEMBLA0A1U8I9700.0A0A1U8I970_GOSHI; scarecrow-like protein 32
STRINGGorai.013G072100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17642910
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-124GRAS family protein