PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A13G0565
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 294aa    MW: 32838.5 Da    PI: 9.0547
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A13G0565genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM41.83.3e-137218412128
          NAM  12 eelvveyLkkkvegkkleleevikevdiykv..ePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktL 106
                  ee++ + Lk+ ++g++++   v+k+ +iy +  ePw++    ++ e    f++ ++ k+++++r +r+t +g W ++   kev++k +ge++g  k +
  Gh_A13G0565  72 EEILFDNLKPIIKGDPIPS-GVLKTRHIYGAnrEPWNIF---DQ-ELPESFWVLTKLKKKSKSRIERTTGDGCWLQQFA-KEVKNKdGGEVIGYDKYF 163
                  78999999999*****999.88999999866559****5...22.233356666777777899************9877.55555549999******* PP

          NAM 107 vfykgrapkgektdWvmheyrl 128
                  ++ + +++k ++ +W+mhe++l
  Gh_A13G0565 164 TYTS-KKNKKSNGQWIMHEFSL 184
                  **95.5555589********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100515.94261203IPR003441NAC domain
SuperFamilySSF1019412.75E-1472203IPR003441NAC domain
PfamPF023657.1E-775184IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MLALRWNIAQ QKIFFNKSLP PPLIFHLSSF GDVSFFITVN KSPSKPTCMN PKSAAKVVAW  60
IAATASAKNA LEEILFDNLK PIIKGDPIPS GVLKTRHIYG ANREPWNIFD QELPESFWVL  120
TKLKKKSKSR IERTTGDGCW LQQFAKEVKN KDGGEVIGYD KYFTYTSKKN KKSNGQWIMH  180
EFSLKEQEAV GLSDLVICEI KNKDAAALSS DYEESKGEIK KNKKRKLMEV PSDSTNDFAT  240
VPVENQTFDY MAPEVGGFSP FSACLDQQPN PWTSAGVGGN LGVPDYNSHH LVPA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1219226KKNKKRKL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5963953e-40JX596395.1 Gossypium hirsutum clone NBRI_GE32970 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012461233.11e-139PREDICTED: NAC domain-containing protein 19-like
TrEMBLA0A0D2TWA31e-138A0A0D2TWA3_GOSRA; Uncharacterized protein
STRINGGorai.013G066200.11e-139(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16345312
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.14e-09NAC domain containing protein 28