PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A13G0575

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 200aa MW: 22864.3 Da PI: 5.5813

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A13G0575	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	119.7	2.6e-37	10	131	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 +ppGfrFhPtdeelvv++L++k++ +++ +vi+++++y ++Pw+L+ k+ +e k+wy++s+r++ nr t++gyWka g +++v+++ ++ Gh_A13G0575 10 VPPGFRFHPTDEELVVHFLQRKAALLPCHP-DVIPDLHLYPYDPWELDGKALGEGKQWYYYSRRSE--------NRNTRNGYWKAMGMEESVVNSsSS 98 69***********************999.99**********977778899**9865........788999******99998678 PP NAM 98 elvglkktLvfykgrap..kgektdWvmheyrl 128 + vg+kk Lvf+ g+a+ g+ktdWvmheyrl Gh_A13G0575 99 RRVGIKKYLVFFIGEAEggGGVKTDWVMHEYRL 131 88******7766511578*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	8.76E-46	8	164	IPR003441	NAC domain
PROSITE profile	PS51005	45.577	10	166	IPR003441	NAC domain
Pfam	PF02365	2.8E-24	11	131	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
MGDNNSINKV PPGFRFHPTD EELVVHFLQR KAALLPCHPD VIPDLHLYPY DPWELDGKAL 60 GEGKQWYYYS RRSENRNTRN GYWKAMGMEE SVVNSSSSRR VGIKKYLVFF IGEAEGGGGV 120 KTDWVMHEYR LSDSDSSSST SRSSKRRGHN SKIDYSKWVI CRVHERSCST SDEEDGGMEL 180 SCLDEVFLSL DDDDEISNCH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-38	10	171	17	170	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-38	10	171	17	170	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-38	10	171	17	170	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-38	10	171	17	170	NO APICAL MERISTEM PROTEIN
3swm_A	1e-38	10	171	20	173	NAC domain-containing protein 19
3swm_B	1e-38	10	171	20	173	NAC domain-containing protein 19
3swm_C	1e-38	10	171	20	173	NAC domain-containing protein 19
3swm_D	1e-38	10	171	20	173	NAC domain-containing protein 19
3swp_A	1e-38	10	171	20	173	NAC domain-containing protein 19
3swp_B	1e-38	10	171	20	173	NAC domain-containing protein 19
3swp_C	1e-38	10	171	20	173	NAC domain-containing protein 19
3swp_D	1e-38	10	171	20	173	NAC domain-containing protein 19
4dul_A	1e-38	10	171	17	170	NAC domain-containing protein 19
4dul_B	1e-38	10	171	17	170	NAC domain-containing protein 19
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in root xylem vessels (PubMed:15923329). Expressed in stems, vascular tissue of cauline leaves and tracheary elements of sepals (PubMed:18069942). {ECO:0000269\|PubMed:15923329, ECO:0000269\|PubMed:18069942}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269\|PubMed:18069942, ECO:0000269\|PubMed:20458494}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016675578.1	1e-148	PREDICTED: NAC domain-containing protein 104-like
Refseq	XP_017618237.1	1e-148	PREDICTED: NAC domain-containing protein 104-like
Swissprot	Q8GWK6	6e-79	NC104_ARATH; NAC domain-containing protein 104
TrEMBL	A0A0B0N9U6	1e-147	A0A0B0N9U6_GOSAR; NAC domain-containing 68
TrEMBL	A0A1U8IGV1	1e-147	A0A1U8IGV1_GOSHI; NAC domain-containing protein 104-like
STRING	Gorai.013G063500.1	1e-121	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3674	28	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	7e-74	xylem NAC domain 1

Publications ? help Back to Top
Zhao C, et al. XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED. New Phytol., 2017. 216(1): p. 76-89 [PMID:28742236] Tang N, et al. Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis. Nat Commun, 2018. 9(1): p. 3884 [PMID:30250259]