PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A13G0668
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family G2-like
Protein Properties Length: 309aa    MW: 34033.7 Da    PI: 8.0707
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A13G0668genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like106.12e-331064155
      G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                 kprl+WtpeLH+rFv+a++qLGG++kAtPk+++++m+++gLtl+h+kSHLQkYRl
  Gh_A13G0668 10 KPRLKWTPELHQRFVDAINQLGGTDKATPKSVMRVMGIPGLTLYHLKSHLQKYRL 64
                 79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.288767IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.6E-32864IPR009057Homeodomain-like
SuperFamilySSF466896.63E-17964IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-231065IPR006447Myb domain, plants
PfamPF002497.7E-101263IPR001005SANT/Myb domain
PfamPF143797.7E-23101147IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MNLVLSTDAK PRLKWTPELH QRFVDAINQL GGTDKATPKS VMRVMGIPGL TLYHLKSHLQ  60
KYRLGKSLGN NTDYKEIQSS NGNFIRDTSD GIHGQMNESL QIPQALHMQM EVQRKLHEQI  120
EVQRHLQLRI EAQGKYLQTV LKKAQETLAG YSSSSAGAEL ARAELSQLVS MVNTGCTSSS  180
FSELTEVGGS SIIERKPMRG TICSMGSSLT SSESSGRNDK APLENGNICT QNVELSLMDF  240
LPEKKPLISC ASNQANGKKR SVSKVSDGVC VEQPLAKRLE LPEEETGGCL RKSGFLELFD  300
LNNQCHNDI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-21966158Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-21966158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A3e-211066157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-211066157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-211066157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-211066157Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-21966158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-21966158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-21966158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-21966158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-21966158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-21966158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5789861e-101JX578986.1 Gossypium hirsutum clone NBRI_GE11130 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016683995.10.0PREDICTED: uncharacterized protein LOC107902293 isoform X1
SwissprotF4I2742e-88PHL8_ARATH; Myb family transcription factor PHL8
TrEMBLA0A1U8J0X80.0A0A1U8J0X8_GOSHI; uncharacterized protein LOC107902293 isoform X1
STRINGGorai.013G086300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38782759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69580.11e-88G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]