PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A13G0832

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB_related

Protein Properties

Length: 154aa MW: 17518.8 Da PI: 5.6519

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A13G0832	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.8	8.8e-17	5	50	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +WT+eEd ll+++++++G g W++I+ g++R++k+c++rw++yl Gh_A13G0832 5 AWTEEEDYLLKKCIERYGEGKWHRIPVLAGLKRCRKSCRLRWLNYL 50 7*******************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	22.192	1	54	IPR017930	Myb domain
SMART	SM00717	3.5E-13	2	52	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	6.6E-20	5	52	IPR009057	Homeodomain-like
CDD	cd00167	3.06E-11	5	50	No hit	No description
Pfam	PF00249	4.1E-15	5	50	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.23E-19	6	74	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.3E-6	53	74	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 154 aa Download sequence Send to blast
MGGVAWTEEE DYLLKKCIER YGEGKWHRIP VLAGLKRCRK SCRLRWLNYL RPNIKRGSFA 60 AEEVNLIINL HSLLAATTTA SMKPRSPAHV SPNTQQETSV WAPFHDVQVN QQGQEVAAEE 120 PGTLLGDLEF DEGGSSKWDW DDFIFNMDLW TASL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016674394.1	1e-100	PREDICTED: transcription factor MYB114-like
TrEMBL	A0A1U8IEZ4	2e-98	A0A1U8IEZ4_GOSHI; transcription factor MYB114-like
STRING	Gorai.013G118300.1	2e-93	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17352	6	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66370.1	1e-32	myb domain protein 113