PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A13G0861
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GeBP
Protein Properties Length: 427aa    MW: 46793.8 Da    PI: 4.74
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A13G0861genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573113.61.2e-35120220297
       DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk.....spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskk 94 
                  lfqrlw++eDei lL+G++d+++++       + ++d+  fy+ +k++++++++k+qlveK+rrLKkK+++ ++k++sgke+sf+++hdq +fe+s+k
  Gh_A13G0861 120 LFQRLWTDEDEIELLKGFLDYTTSKTNsnsshHHHHDTALFYDLIKSKLQLDFNKNQLVEKLRRLKKKYRNVMNKINSGKEFSFKSPHDQATFEISRK 217
                  79*******************7766554544334459999********************************************************** PP

       DUF573  95 iWg 97 
                  iW 
  Gh_A13G0861 218 IWS 220
                  **7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.6E-32121220IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MASEQYGAVF EESQDDDEEP SSSGNDDVLN GNDEEDEELL EEEEEEDFNS PSLLPQPIAA  60
VVPSASIPAV PLAVPSSTVV TVASVPLRGS TPDSKRQRID SAVSEKKPPP PQQFDESRRL  120
FQRLWTDEDE IELLKGFLDY TTSKTNSNSS HHHHHDTALF YDLIKSKLQL DFNKNQLVEK  180
LRRLKKKYRN VMNKINSGKE FSFKSPHDQA TFEISRKIWS SSVGKVEDNV LDYDENNITP  240
TPTPTTTNIN FLDECGEKKN LTPKSAANKR RSKSKGGKLE EKRVLNDGFV ISNNNFNNRS  300
DHDQGNVEGL GGGGGGSGAG GERGNLTAVV EETVKSCLTP VFKELLGSLI GGGGGGGRGI  360
SGMAMNAMPL SFGGTLNFGS GGGGNVEFMD ERWRKQQILE LEVYSKRLEL VQDQIKVALE  420
ELRSIGG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.9861e-154boll| ovule| root| stem
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5778198e-66JX577819.1 Gossypium hirsutum clone NBRI_GE9719 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016742725.10.0PREDICTED: mediator-associated protein 1-like
TrEMBLA0A1U8NV460.0A0A1U8NV46_GOSHI; mediator-associated protein 1-like
STRINGGorai.013G121800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30982764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.11e-61DNA-binding storekeeper protein-related transcriptional regulator