PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A13G0917
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GATA
Protein Properties Length: 146aa    MW: 15665 Da    PI: 10.3129
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A13G0917genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA62.16.7e-20943135
         GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                 C+ C+ttkTplWR gp g+k+LCnaCG++yrkk++
  Gh_A13G0917  9 CTDCKTTKTPLWRGGPAGPKSLCNACGIRYRKKRR 43
                 ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004019.8E-16354IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.585339IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.33E-13443No hitNo description
Gene3DG3DSA:3.30.50.101.7E-16743IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.38E-14856No hitNo description
PROSITE patternPS003440934IPR000679Zinc finger, GATA-type
PfamPF003207.7E-18943IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MSESSKKFCT DCKTTKTPLW RGGPAGPKSL CNACGIRYRK KRRAMLCLNK GIEKKKEISH  60
SPSSDSSSSI APANDGGGEN LSANLNGLSE SVKMSLFALG SEVLFQTSSS LSGVVKKQRC  120
QRRRRLGEEE QAAISLMALS CGTVFA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.123640.0root
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6125257e-33JX612525.1 Gossypium hirsutum clone NBRI_GE55096 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017618886.11e-90PREDICTED: GATA transcription factor 16-like
TrEMBLA0A2P5QYC91e-75A0A2P5QYC9_GOSBA; Uncharacterized protein
STRINGGorai.013G127900.16e-76(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16911712
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.11e-17GATA transcription factor 15