PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A13G1044
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 246aa    MW: 28813.6 Da    PI: 4.9001
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A13G1044genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.51.7e-14956148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W+ +Ed++l+ +++++G  +W+  ++  g+ R++k+c++rw +yl
      Gh_A13G1044  9 KGTWSHDEDQKLIAYIRKYGIWNWNEMPKFAGLQRSGKSCRLRWMNYL 56
                     799*****************99************************97 PP
2Myb_DNA-binding49.31.1e-1562105146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++ eE+e ++++ k lG++ W++Ia++++  Rt++++k++w++
      Gh_A13G1044  62 RGNFSREEEETIIHLQKTLGNR-WSAIAARLP-QRTDNDIKNYWNT 105
                      89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.757456IPR017930Myb domain
SuperFamilySSF466895.24E-287103IPR009057Homeodomain-like
SMARTSM007174.7E-11858IPR001005SANT/Myb domain
PfamPF002496.1E-13956IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.6E-221063IPR009057Homeodomain-like
CDDcd001673.08E-91156No hitNo description
PROSITE profilePS5129423.67757111IPR017930Myb domain
SMARTSM007172.5E-1461109IPR001005SANT/Myb domain
PfamPF002493.3E-1462105IPR001005SANT/Myb domain
CDDcd001671.17E-964107No hitNo description
Gene3DG3DSA:1.10.10.601.3E-2464111IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MVRQPYLKKG TWSHDEDQKL IAYIRKYGIW NWNEMPKFAG LQRSGKSCRL RWMNYLRPKI  60
RRGNFSREEE ETIIHLQKTL GNRWSAIAAR LPQRTDNDIK NYWNTRLKKR VIVEKKNSSS  120
ATTETKSSME ENSSDADSSM MVDILLDYQI PTMDSFPELA ADNTISLSDC DISVAVDDHY  180
SMAMDNNLVS SENYWEIENL WGQLLTMEGL DCEVMSPNSQ LWLHELIYVC DSYYDPVVDL  240
WINPFI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-2751113108B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5895711e-63JX589571.1 Gossypium hirsutum clone NBRI_GE24298 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016675463.10.0PREDICTED: transcription factor MYB23-like
TrEMBLA0A1U8IGH80.0A0A1U8IGH8_GOSHI; transcription factor MYB23-like
STRINGGorai.013G143200.11e-174(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17382411
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.12e-50myb domain protein 14