PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A13G1060

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

G2-like

Protein Properties

Length: 347aa MW: 38480.8 Da PI: 8.3274

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A13G1060	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107	1.1e-33	32	86	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQk+Rl Gh_A13G1060 32 KPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 86 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.347	29	89	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.2E-32	29	87	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.56E-16	31	87	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.1E-23	32	87	IPR006447	Myb domain, plants
Pfam	PF00249	1.1E-7	34	84	IPR001005	SANT/Myb domain
Pfam	PF14379	3.1E-22	121	160	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010088	Biological Process	phloem development
GO:0010089	Biological Process	xylem development
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
MFQPKKPTTM NSHDRPMCVQ GDSGLVLTTD PKPRLRWTVE LHERFVDAVT QLGGPDKATP 60 KTIMRVMGVK GLTLYHLKSH LQKFRLGKQP HKEINDHSMK DDLQRSAASS SGMMARSMNE 120 MQMEVQRRLH EQLEVQRHLQ LRIEAQGKYM QSILEKACQT LAGENMASGG YKGMGNQGVP 180 DIGAMKDFGP LNFPPFQDLN IYGGDQLDLP HNMDRPLLDG FISNNDNTCL GKKRPSPYSG 240 SGKSPLIWSD DLRLQDLGTA PSCLGPQDDP FKTDQIQLAP PSTELDSISE IYDAKPVLSG 300 DGIGEKKFEA SPKLERPSPR RAALQTERMN PMINSGSVAQ GRNSPFG

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

MFQPKKPTTM NSHDRPMCVQ GDSGLVLTTD PKPRLRWTVE LHERFVDAVT QLGGPDKATP  60
KTIMRVMGVK GLTLYHLKSH LQKFRLGKQP HKEINDHSMK DDLQRSAASS SGMMARSMNE  120
MQMEVQRRLH EQLEVQRHLQ LRIEAQGKYM QSILEKACQT LAGENMASGG YKGMGNQGVP  180
DIGAMKDFGP LNFPPFQDLN IYGGDQLDLP HNMDRPLLDG FISNNDNTCL GKKRPSPYSG  240
SGKSPLIWSD DLRLQDLGTA PSCLGPQDDP FKTDQIQLAP PSTELDSISE IYDAKPVLSG  300
DGIGEKKFEA SPKLERPSPR RAALQTERMN PMINSGSVAQ GRNSPFG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	1e-19	32	88	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-19	32	88	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-19	32	88	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-19	32	88	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.23907	0.0	boll

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Specifically expressed in the developing protophloem sieve elements soon after the phloem-specific cell divisions have taken place. Also found in the companion cells and metaphloem sieve elements. May not be necessary for the initial steps of protophloem differentiation. {ECO:0000269\|PubMed:14614507, ECO:0000269\|PubMed:18523061}.
Uniprot	TISSUE SPECIFICITY: Expressed in shoots and roots, specifically in the developing protophloem sieve elements (PubMed:14614507). Detected in phloem and/or cambium (PubMed:15923329). Expressed in the phloem tissues of various organs, including leaves and cotyledons, during vegetative growth (PubMed:26239308). {ECO:0000269\|PubMed:14614507, ECO:0000269\|PubMed:15923329, ECO:0000269\|PubMed:26239308}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development. Regulates the expression of the transcription factor NAC045 (AC A4VCM0). May activate the transcription of specific genes involved in phosphate uptake or assimilation (PubMed:15592750). Promotes flowering through transcriptional activation of both FT and its transport machinery component, FTIP1 (PubMed:26239308). {ECO:0000269\|PubMed:14614507, ECO:0000269\|PubMed:18523061, ECO:0000269\|PubMed:25081480, ECO:0000269\|PubMed:26239308, ECO:0000305\|PubMed:15592750}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by phosphate deficiency. {ECO:0000269\|PubMed:15592750}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JF812969	6e-54	JF812969.1 Theobroma cacao clone GU261 microsatellite mTc-UNICAMP02 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016674057.1	0.0	PREDICTED: myb family transcription factor APL-like
Swissprot	Q9SAK5	1e-131	APL_ARATH; Myb family transcription factor APL
TrEMBL	A0A0B0NWX1	0.0	A0A0B0NWX1_GOSAR; Myb family transcription factor APL
TrEMBL	A0A1U8I790	0.0	A0A1U8I790_GOSHI; myb family transcription factor APL-like
STRING	Gorai.013G146200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5044	27	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79430.2	1e-123	G2-like family protein

Publications ? help Back to Top
Martínez-Navarro AC,Galván-Gordillo SV,Xoconostle-Cázares B,Ruiz-Medrano R Vascular gene expression: a hypothesis. Front Plant Sci, 2013. 4: p. 261 [PMID:23882276] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Kondo Y, et al. Vascular Cell Induction Culture System Using Arabidopsis Leaves (VISUAL) Reveals the Sequential Differentiation of Sieve Element-Like Cells. Plant Cell, 2016. 28(6): p. 1250-62 [PMID:27194709] Shibuta M,Abe M FE Controls the Transcription of Downstream Flowering Regulators Through Two Distinct Mechanisms in Leaf Phloem Companion Cells. Plant Cell Physiol., 2017. 58(11): p. 2017-2025 [PMID:29036620]