PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A13G1061

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 317aa MW: 36022.3 Da PI: 4.9166

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A13G1061	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	180.1	5.8e-56	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 lppGfrFhPtdeelv +yL +k++g+++el e+i+evd+yk+ePwdLp k + +++ ewyf+s+rdkky++g+r+nrat+ gyWkatgkd++v + + Gh_A13G1061 6 LPPGFRFHPTDEELVAYYLDRKISGRTIEL-EIIPEVDLYKCEPWDLPdKsFLPSKDMEWYFYSPRDKKYPNGSRTNRATRGGYWKATGKDRAVQT-S 101 79**************************.99**********96435566888*********************************9.9 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 +++vg+kktLv+y+grap+g +t+Wvmheyrl Gh_A13G1061 102 KAVVGMKKTLVYYRGRAPHGIRTNWVMHEYRL 133 99**************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.4E-64	3	157	IPR003441	NAC domain
PROSITE profile	PS51005	60.737	6	157	IPR003441	NAC domain
Pfam	PF02365	3.7E-29	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence Send to blast
MAPMTLPPGF RFHPTDEELV AYYLDRKISG RTIELEIIPE VDLYKCEPWD LPDKSFLPSK 60 DMEWYFYSPR DKKYPNGSRT NRATRGGYWK ATGKDRAVQT SKAVVGMKKT LVYYRGRAPH 120 GIRTNWVMHE YRLLHSASPT APSSLKDSYS LCRIFKKNIQ IPKTKGAAVE NNQSFGDEIS 180 RGREAEVEDE NFNTSSSDVT QGTPNETGMA DEYQPPFTSD EANSSANLSS LGPDFSSDLF 240 QIPSYTNLHY QAPYPPLELE DFPQINIISE TKASKAEIID EYMMYDKCKD YMNGSLEEIF 300 SLCASQDNSM PPLSMHD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-58	1	158	12	166	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-58	1	158	12	166	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-58	1	158	12	166	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-58	1	158	12	166	NO APICAL MERISTEM PROTEIN
4dul_A	5e-58	1	158	12	166	NAC domain-containing protein 19
4dul_B	5e-58	1	158	12	166	NAC domain-containing protein 19
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in a few sieve element cells before enucleation and in phloem-pole pericycle cells. {ECO:0000269\|PubMed:25081480}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00205	DAP	Transfer from AT1G54330	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC847198	0.0	KC847198.1 Gossypium hirsutum NAC domain protein NAC21 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017619907.1	0.0	PREDICTED: NAC domain-containing protein 86-like
Swissprot	Q9FFI5	1e-85	NAC86_ARATH; NAC domain-containing protein 86
TrEMBL	A0A1U8IE28	0.0	A0A1U8IE28_GOSHI; NAC domain-containing protein 86-like
STRING	Gorai.013G146300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8123	26	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G54330.1	1e-114	NAC domain containing protein 20

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]