PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A13G1439

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 188aa MW: 21478.8 Da PI: 10.2838

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A13G1439	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	169.2	1.4e-52	8	142	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..k 96 lppGfrFhPtdeel+ +yL kk++++++++ ++i++vdiyk++PwdLp k+ +ekewyfFs+rd+ky++g r+nra+ sgyWkatg+dk ++++ Gh_A13G1439 8 LPPGFRFHPTDEELILHYLMKKLSSSPFPV-SIIADVDIYKFDPWDLPDKAVFGEKEWYFFSPRDRKYPNGARPNRAAGSGYWKATGTDKIIVASsmA 104 79**************************.89***********7777899**********************************97550 PP NAM 97 gel........vglkktLvfykgrapkgektdWvmheyrl 128 + +g+kk Lvfykgr pkg kt+W+mheyrl Gh_A13G1439 105 --AgrggvfsnIGVKKALVFYKGRPPKGIKTNWIMHEYRL 142 ..355566778*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.57E-60	5	149	IPR003441	NAC domain
PROSITE profile	PS51005	55.372	8	165	IPR003441	NAC domain
Pfam	PF02365	1.6E-27	9	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
MRHPHSSLPP GFRFHPTDEE LILHYLMKKL SSSPFPVSII ADVDIYKFDP WDLPDKAVFG 60 EKEWYFFSPR DRKYPNGARP NRAAGSGYWK ATGTDKIIVA SSMAAGRGGV FSNIGVKKAL 120 VFYKGRPPKG IKTNWIMHEY RLSHNPNPNS NNRSFKSKDC SMRVRKPLLY SCLKYPSHCI 180 YTVPICSH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	9e-66	7	159	16	156	NO APICAL MERISTEM PROTEIN
1ut4_B	9e-66	7	159	16	156	NO APICAL MERISTEM PROTEIN
1ut7_A	9e-66	7	159	16	156	NO APICAL MERISTEM PROTEIN
1ut7_B	9e-66	7	159	16	156	NO APICAL MERISTEM PROTEIN
3swm_A	1e-65	7	159	19	159	NAC domain-containing protein 19
3swm_B	1e-65	7	159	19	159	NAC domain-containing protein 19
3swm_C	1e-65	7	159	19	159	NAC domain-containing protein 19
3swm_D	1e-65	7	159	19	159	NAC domain-containing protein 19
3swp_A	1e-65	7	159	19	159	NAC domain-containing protein 19
3swp_B	1e-65	7	159	19	159	NAC domain-containing protein 19
3swp_C	1e-65	7	159	19	159	NAC domain-containing protein 19
3swp_D	1e-65	7	159	19	159	NAC domain-containing protein 19
4dul_A	9e-66	7	159	16	156	NAC domain-containing protein 19
4dul_B	9e-66	7	159	16	156	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269\|PubMed:18849494, ECO:0000269\|PubMed:24363315}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269\|PubMed:24363315, ECO:0000269\|PubMed:24659488}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012463494.1	1e-116	PREDICTED: NAC domain-containing protein 18-like, partial
Swissprot	Q84TD6	3e-78	NAC47_ARATH; NAC transcription factor 47
TrEMBL	A0A0B0NEF4	1e-117	A0A0B0NEF4_GOSAR; NAC domain-containing 29-like protein
STRING	Gorai.013G191800.1	1e-116	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM190	28	276

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04070.2	7e-80	NAC domain containing protein 47

Publications ? help Back to Top
Hofmann NR A NAC transcription factor for flooding: SHYG helps plants keep their leaves in the air. Plant Cell, 2013. 25(12): p. 4771 [PMID:24363314] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]