PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A13G1545
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GATA
Protein Properties Length: 175aa    MW: 19299.3 Da    PI: 10.2661
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A13G1545genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.31.2e-192559135
         GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                 C+ C+ttkTplWR gp+g+k+LCnaCG++yrk+++
  Gh_A13G1545 25 CTDCKTTKTPLWRGGPSGPKSLCNACGIKYRKRRR 59
                 ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.28E-131859No hitNo description
SMARTSM004012.6E-171974IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.108.7E-162359IPR013088Zinc finger, NHR/GATA-type
CDDcd002029.04E-142461No hitNo description
PROSITE patternPS0034402550IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.6372555IPR000679Zinc finger, GATA-type
PfamPF003202.1E-172559IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MGVMDLREQK SLNEDTMSET MKKFCTDCKT TKTPLWRGGP SGPKSLCNAC GIKYRKRRRA  60
MLGLNEASEK KKVKWHLSSS SSLSSSSTIT TSSASIATTN DESVDDMKPS GRFSGLGETV  120
KIRLLALSGE VLLQSSLSLT WVVKKQRCQR RRKVGEDEEL AAFSLMAMSY GLVFA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15458RKRRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016673724.11e-125PREDICTED: GATA transcription factor 15-like
TrEMBLA0A1U8ID481e-124A0A1U8ID48_GOSHI; GATA transcription factor 15-like
STRINGGorai.013G206400.11e-106(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16911712
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.17e-17GATA transcription factor 15