PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A13G1676
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 214aa    MW: 23944.6 Da    PI: 5.5869
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A13G1676genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.33.8e-183484155
          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 s++kGVr +k +g+Wv+eIr p++   r r++lg+++ta++Aa+a +aa  +l+g
  Gh_A13G1676 34 SQFKGVRKRK-WGKWVSEIRLPNS---RERIWLGSYDTADKAARAFDAAVFCLRG 84
                 789****999.**********933...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.71E-293494No hitNo description
SuperFamilySSF541712.29E-203493IPR016177DNA-binding domain
SMARTSM003802.5E-333598IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-293593IPR001471AP2/ERF domain
PfamPF008471.9E-103584IPR001471AP2/ERF domain
PROSITE profilePS5103221.6413592IPR001471AP2/ERF domain
PRINTSPR003673.8E-93647IPR001471AP2/ERF domain
PRINTSPR003673.8E-95874IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MSLHTPHHHY YNFLHSKTMV KLSNEKPRGE RNDSQFKGVR KRKWGKWVSE IRLPNSRERI  60
WLGSYDTADK AARAFDAAVF CLRGPSAKFN FPHNPPDIAF RKSLTPSEIQ TFAARFANSE  120
PPTTIHSEQS MSSCGTESPS PSVRLEWETP VVGSFTDGLT MDAGNYGLDY GIFPGFDDFS  180
SDVVIGSSVG NIAGEEEEDN VDGILVSESF LWDF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1634931373Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13642KGVRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016675509.11e-160PREDICTED: ethylene-responsive transcription factor ERF017-like
SwissprotQ84QC22e-48ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLA0A1U8IHZ51e-158A0A1U8IHZ5_GOSHI; ethylene-responsive transcription factor ERF017-like
STRINGGorai.013G222700.11e-151(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16142890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.14e-41ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  3. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]