PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A13G1728
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 333aa    MW: 37018.8 Da    PI: 7.3515
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A13G1728genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.51e-07127146626
                  -SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                  C++f + G C+ Gd+C FaHg
  Gh_A13G1728 127 CSDFKK-GNCRKGDSCEFAHG 146
                  ******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.7E-5121147IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.404122148IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-5127146IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-5127148IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.812156180IPR000571Zinc finger, CCCH-type
SMARTSM0035616156179IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MMLEETRQLN PTVLVPPWPY LGDDLAAENN FSDNGNPFYL QEALAALQCY LPSDEPGFES  60
DSEISGLYNP GSPVDAYSCD HFRMFEFKVR RCGRGRSHDW TECPYAHPGE KARRRDPRKF  120
HYSGMACSDF KKGNCRKGDS CEFAHGVFEC WLHPARYRTL PCKDGSGCRR RVCFFAHTPD  180
QLRVINFADS FDSSPPCTKA MSFSGSPPAE CSPSVSPIAQ PPTINTMVAS LRNLRLGKVK  240
SLPSSGFGSP KGSMIRPSLS SLPSTPTRNL TRPGIGYLDF ECGEEFVMER VESGKHLRSK  300
IFEKLSQANS LERVYSGLVS GGPDVDWVSD LVN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.96000.0boll| ovule
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017618410.10.0PREDICTED: zinc finger CCCH domain-containing protein 20-like
SwissprotQ9M0G21e-118C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLA0A2P5XTD50.0A0A2P5XTD5_GOSBA; Uncharacterized protein
STRINGGorai.013G229000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12492788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29190.11e-114C3H family protein
Publications ? help Back to Top
  1. Dokládal L, et al.
    cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
    Front Plant Sci, 2015. 6: p. 985
    [PMID:26617625]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]