PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A13G1818

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 249aa MW: 28349.2 Da PI: 5.0078

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A13G1818	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	41.6	2.3e-13	55	104	7	54
HHHHHHHHHHHHHHHHHHCTSCC.C....TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.as.kapskKlsKaeiLekAveYIksL 54 Er+RR+++N++++ Lr ++P+ ++ +++++ ++Ka+i + A++YI++L Gh_A13G1818 55 VSERNRRKKLNERLFALRAVVPNiSMlSNRHGFMDKASIIKDAIDYIQEL 104 57*******************7779999999*************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	6.15E-15	39	119	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.494	48	104	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.12E-11	52	108	No hit	No description
SMART	SM00353	9.4E-12	54	110	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.8E-15	54	119	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.3E-11	55	104	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MENIENIGDE YKNYWETKYF LENEEYSWPI DEFSGYYDSS SPDGAASSVA AKNIVSERNR 60 RKKLNERLFA LRAVVPNISM LSNRHGFMDK ASIIKDAIDY IQELHDQEGR IQAEIRELES 120 GKLKKNPGFE YDQELSGLRS KKTKLDNIFD YGGSRASPIE VLELKVTHMG EKTMVVSITC 180 SKKTDTMVRL CEVFESLKLK IITANITAVS GRLLKTVFVE ADEREKDELK VQIETAIAAL 240 NDPQSPMSM

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017628370.1	1e-175	PREDICTED: transcription factor bHLH35-like
Swissprot	Q2HIV9	2e-89	BH035_ARATH; Transcription factor bHLH35
TrEMBL	A0A0B0N0J5	1e-173	A0A0B0N0J5_GOSAR; Transcription factor bHLH35-like protein
STRING	Gorai.013G242800.1	1e-171	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6367	27	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57150.1	6e-92	bHLH family protein