PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A13G1934
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 578aa    MW: 64620.2 Da    PI: 10.0112
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A13G1934genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.12.8e-11281328552
                  CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 
                  +r+rr++kNRe+A rsR+R++a++ eLe +  +L++eN +Lk+ +ee 
  Gh_A13G1934 281 RRQRRMIKNRESAARSRARRQAYTVELELELNQLKQENAKLKQLVEEN 328
                  69************************************9888555443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003387.4E-10277345IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.875279327IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.25E-9281327No hitNo description
Gene3DG3DSA:1.20.5.1701.3E-11281330No hitNo description
PfamPF001707.4E-10281332IPR004827Basic-leucine zipper domain
PROSITE patternPS000360284299IPR004827Basic-leucine zipper domain
SuperFamilySSF568081.83E-65366578IPR023674Ribosomal protein L1-like
Gene3DG3DSA:3.30.190.207.0E-48368422IPR016094Ribosomal protein L1, 2-layer alpha/beta-sandwich
CDDcd004031.25E-62371577IPR028364Ribosomal protein L1/ribosomal biogenesis protein
PfamPF006877.9E-43384573IPR028364Ribosomal protein L1/ribosomal biogenesis protein
Gene3DG3DSA:3.40.50.7909.3E-42424513IPR016095Ribosomal protein L1, 3-layer alpha/beta-sandwich
PROSITE patternPS011990478497IPR023673Ribosomal protein L1, conserved site
Gene3DG3DSA:3.30.190.207.0E-48514577IPR016094Ribosomal protein L1, 2-layer alpha/beta-sandwich
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003723Molecular FunctionRNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 578 aa     Download sequence    Send to blast
MALSESESVA YGGIKKTGSP TQAPESPHEE STPDRSNSSP NKQNSIFSLT LDEIQLKSGK  60
TFGSMNMDEF LANLWNVEEN QQVLSQPEPI DGDKGMGCQP SLARQGSFSV PTPLCKKTVD  120
EVWFEIQKEL PQPREANDVA DHEPPQRQQT LGEITLEDFL IKAGVVQEPS GSSQQNKASP  180
IRINGASLDA NYIMDAPIRN NNASMDANFG MGHMIGLGFP GHQIVSNGYA AGYSILAQTV  240
MGESSNGTEN GNRTNSLLQP AVAPQNKKRI VDGPPEVVVE RRQRRMIKNR ESAARSRARR  300
QAYTVELELE LNQLKQENAK LKQLVEENDK RRKEEVLKRK KELTCAKKKV DKMMTLRRTV  360
SFGCKLQSDA LREAISTIVA NSKEKNRKFT ETIELQIGLK NYDPQKDKRF SGSVKLPHIP  420
RPKMKICMLG DAQHVEEAEK IGLDYMDVEA LKKLNKNKKL VKKLAKKYHA FLASESVIKQ  480
IPRLLGPGLN KAGKFPTLVT HQESLESKVN ETKAMVKFQL KKVLCMGVAV GNVAMEEKQI  540
FQNVQMSVNF LVSLLKKNWQ NVRCLYLKST MGPSNRIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4v3p_LA1e-1193655783216Ribosomal protein
4v7e_Cz1e-119365578321660S ribosomal protein L1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1451462KKLNKNKKLVKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.48460.0boll| ovule| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016730318.10.0PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 1
TrEMBLA0A2P5YFX90.0A0A2P5YFX9_GOSBA; Uncharacterized protein
STRINGGorai.013G258300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM116522230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44460.18e-57bZIP family protein