PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A13G1983
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WOX
Protein Properties Length: 244aa    MW: 27010 Da    PI: 8.8522
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A13G1983genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.72.6e-201372357
                 --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                 +R+++tkeq+  Le+l+++  r+psa+++++++++l     ++ ++V++WFqN++a++++
  Gh_A13G1983 13 SRWNPTKEQISMLESLYKQgIRTPSADQIQQITSRLkaygTIEGKNVFYWFQNHKARQRQ 72
                 7*****************99**************************************97 PP
2Wus_type_Homeobox115.52.6e-371274365
  Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                       ++RW+Pt+eQi +Le+lyk+G+rtP++++iq+it++L++yG ie+kNVfyWFQN+kaR+rqkq
        Gh_A13G1983 12 NSRWNPTKEQISMLESLYKQGIRTPSADQIQQITSRLKAYGTIEGKNVFYWFQNHKARQRQKQ 74
                       68***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.835873IPR001356Homeobox domain
SuperFamilySSF466893.25E-13879IPR009057Homeodomain-like
SMARTSM003892.7E-61077IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.2E-81372IPR009057Homeodomain-like
PfamPF000464.8E-181372IPR001356Homeobox domain
CDDcd000864.90E-71474No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009942Biological Processlongitudinal axis specification
GO:0010654Biological Processapical cell fate commitment
GO:0048825Biological Processcotyledon development
GO:0080167Biological Processresponse to karrikin
GO:0090451Biological Processcotyledon boundary formation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MEGGGGGGGG GNSRWNPTKE QISMLESLYK QGIRTPSADQ IQQITSRLKA YGTIEGKNVF  60
YWFQNHKARQ RQKQKQENLA YINRYIHHHH RAQPVFHPPP CTNVVCAGPY FVPQADHHHH  120
LGFYPQCPKV LLPSRSIKRR GRPIGKTGKS LFYNGNAYDH TMVPSPDTEN LYTGAFNNGG  180
GATNHHETLP LFPLHPTGVS EETLMASSSP TGSTSCETTI SAGGVDNHES NNEGSGEHRF  240
IDFF
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5837213e-76JX583721.1 Gossypium hirsutum clone NBRI_GE16841 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016732896.10.0PREDICTED: WUSCHEL-related homeobox 2-like
TrEMBLA0A1U8N1C50.0A0A1U8N1C5_GOSHI; WUSCHEL-related homeobox 2-like
STRINGGorai.013G264200.11e-162(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69142844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59340.14e-59WUSCHEL related homeobox 2