PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A13G1993
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 169aa    MW: 18685.8 Da    PI: 8.7171
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A13G1993genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.000344264123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 + C+ C+k+Fs+   L  H  +H
  Gh_A13G1993 42 FACKTCDKRFSSFQALGGHRASH 64
                 78**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.18E-941106No hitNo description
PfamPF139126.0E-124166IPR007087Zinc finger, C2H2
SMARTSM003550.194264IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.1184269IPR007087Zinc finger, C2H2
PROSITE patternPS0002804464IPR007087Zinc finger, C2H2
PfamPF139124.7E-1083107IPR007087Zinc finger, C2H2
SMARTSM003550.2384106IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.64284106IPR007087Zinc finger, C2H2
PROSITE patternPS00028086106IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MKRDREDREI EAMAMVNCLM LLSKVGQIDP PKHNTIHQRG VFACKTCDKR FSSFQALGGH  60
RASHKKPRFT DVDLPVSPKK PKTHECSICG LEFPIGQALG GHMRKHRVVS NEGMVVTRPV  120
TEKLNGDDAD NDGGLCLDLK LAPCGIDLDL KLEKAAAPPR MPPVVHLFI
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.118680.0boll| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017645017.11e-121PREDICTED: zinc finger protein ZAT12-like
TrEMBLA0A2P5Y5N71e-120A0A2P5Y5N7_GOSBA; Uncharacterized protein
STRINGGorai.013G265200.11e-118(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53128150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59820.12e-32C2H2 family protein