PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A13G2071

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 689aa MW: 75078.3 Da PI: 8.6759

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A13G2071	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	37.3	6e-12	185	247	1	63
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+e kr r+ +NRe+A+ sRqRKk ++eeLe+kv ++ + ++L +++ e a+l++++ Gh_A13G2071 185 EEEEKRKARLLRNRESAQLSRQRKKHYVEELEDKVRTMHSTITDLNNKIAFFMAENATLRQQL 247 6899******************************************99999999999988875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00170	5.4E-11	185	247	IPR004827	Basic-leucine zipper domain
SMART	SM00338	3.9E-17	185	249	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.3	187	250	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.0E-17	189	248	No hit	No description
SuperFamily	SSF57959	5.7E-12	189	247	No hit	No description
CDD	cd14704	1.48E-20	190	241	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 689 aa Download sequence Send to blast
MAEAPLEPQM GSELESLAIP PMDPLYLSSD LGFPLDENDD FQLTFDDFDE LYFPSDSDHL 60 IMPDSSDAPA FTSESYVERY LNSSSPGLDS FSGPSSSGNS HSPISSLGSG NCGSAASDDT 120 NVTSPDSGNN MDQKIDVEEL GKRRVSKRKK GNEETDSIKC RRSSSLLTAN NYNSNSDNKS 180 NSLSEEEEKR KARLLRNRES AQLSRQRKKH YVEELEDKVR TMHSTITDLN NKIAFFMAEN 240 ATLRQQLSTG GAGGGSAGMC PPQPVPLPMY PPVAYPWMPC GPPYMMKPPG SQVPLIPIPR 300 LKTQQQSRPA SKAKKNESKT KKVASVSVLG MLFFILMFSG LVPIMNLRYD NTPVGSGPGF 360 VGDGFYEVHR GRVLRVDSHL NRSKYSRDAA FSYGGFNISN RVHGRRSESG GERKETGAQS 420 APDYIKNVSE PLTASLYVPR NDKLVKIDGN LIIHSVLASE KALASHKASE RKNKETGLAI 480 PKNFSPALAI PNARENGGKH SREYRNPAER PMALSSGSAD ALKDHIRSTA ADGKMQQWFR 540 EGVAGPMLSS GMCTEVFQFD ASAPGAIVPA SSVTPESAKS RQNATQLNKG RNRRILHGHP 600 VPLSRSDLNI TQEHVGRNSG KQNFQGNKTA SSMVVSVLID PREAGDGDMD DMIVPKSLSR 660 IFVVVLLDSV KYVTYSCGLP RSGLHLVTA

Sequence ? help Back to Top

Protein Sequence Length: 689 aa Download sequence Send to blast

MAEAPLEPQM GSELESLAIP PMDPLYLSSD LGFPLDENDD FQLTFDDFDE LYFPSDSDHL  60
IMPDSSDAPA FTSESYVERY LNSSSPGLDS FSGPSSSGNS HSPISSLGSG NCGSAASDDT  120
NVTSPDSGNN MDQKIDVEEL GKRRVSKRKK GNEETDSIKC RRSSSLLTAN NYNSNSDNKS  180
NSLSEEEEKR KARLLRNRES AQLSRQRKKH YVEELEDKVR TMHSTITDLN NKIAFFMAEN  240
ATLRQQLSTG GAGGGSAGMC PPQPVPLPMY PPVAYPWMPC GPPYMMKPPG SQVPLIPIPR  300
LKTQQQSRPA SKAKKNESKT KKVASVSVLG MLFFILMFSG LVPIMNLRYD NTPVGSGPGF  360
VGDGFYEVHR GRVLRVDSHL NRSKYSRDAA FSYGGFNISN RVHGRRSESG GERKETGAQS  420
APDYIKNVSE PLTASLYVPR NDKLVKIDGN LIIHSVLASE KALASHKASE RKNKETGLAI  480
PKNFSPALAI PNARENGGKH SREYRNPAER PMALSSGSAD ALKDHIRSTA ADGKMQQWFR  540
EGVAGPMLSS GMCTEVFQFD ASAPGAIVPA SSVTPESAKS RQNATQLNKG RNRRILHGHP  600
VPLSRSDLNI TQEHVGRNSG KQNFQGNKTA SSMVVSVLID PREAGDGDMD DMIVPKSLSR  660
IFVVVLLDSV KYVTYSCGLP RSGLHLVTA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	142	148	RRVSKRK
2	580	593	RQNATQLNKGRNRR

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.16061	0.0	boll\| ovule

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in salt and osmotic stress responses. Functions as a stress sensor and transducer in a signaling pathway that resembles an ER stress response. Following salt stress, BZIP17 is cleaved by SBT6.1 (S1P) and S2P at the C-terminus and the N-terminal bZIP component is translocated to the nucleus, where it activates the expression of salt stress response genes (PubMed:17662035). Functions as a stress sensor and transducer in ER stress signaling pathway. ER stress induces proteolysis of BZIP17 by SBT6.1 (S1P) and S2P, and the N-terminal bZIP component is translocated to the nucleus, where it activates the expression and production of ER chaperones, as well as protein involved in brassinosteroid (BR) signaling, which is required for stress acclimation and growth (PubMed:20876872). {ECO:0000269\|PubMed:17662035, ECO:0000269\|PubMed:20876872}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016740655.1	0.0	PREDICTED: bZIP transcription factor 17-like
Swissprot	O22208	1e-179	BZP17_ARATH; bZIP transcription factor 17
TrEMBL	A0A1U8NP78	0.0	A0A1U8NP78_GOSHI; bZIP transcription factor 17-like
STRING	Gorai.013G000800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8881	27	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40950.1	1e-151	bZIP family protein

Publications ? help Back to Top
Zhou SF, et al. Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis. New Phytol., 2015. 208(1): p. 188-97 [PMID:25919792] Sagor GH, et al. The polyamine spermine induces the unfolded protein response via the MAPK cascade in Arabidopsis. Front Plant Sci, 2015. 6: p. 687 [PMID:26442007] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Kim JS,Yamaguchi-Shinozaki K,Shinozaki K ER-Anchored Transcription Factors bZIP17 and bZIP28 Regulate Root Elongation. Plant Physiol., 2018. 176(3): p. 2221-2230 [PMID:29367234] Cifuentes-Esquivel N, et al. bZIP17 regulates the expression of genes related to seed storage and germination, reducing seed susceptibility to osmotic stress. J. Cell. Biochem., 2018. 119(8): p. 6857-6868 [PMID:29693271] Guan P, et al. SENSITIVE TO SALT1, An Endoplasmic Reticulum-Localized Chaperone, Positively Regulates Salt Resistance. Plant Physiol., 2018. 178(3): p. 1390-1405 [PMID:30287478]