PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A13G2204
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 567aa    MW: 61363.8 Da    PI: 6.811
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A13G2204genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.53.9e-10418475562
                  CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                  kr++r   NR +A rs +RK  +i eLe kv++L++e ++L  +l  l+  +  l+++
  Gh_A13G2204 418 KRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQ 475
                  9********************************************9998877666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.8E-18414478IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.737416479IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.16E-11418469No hitNo description
Gene3DG3DSA:1.20.5.1709.2E-11418474No hitNo description
PfamPF001708.0E-9418472IPR004827Basic-leucine zipper domain
CDDcd147038.97E-25419468No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
MGDGEEGNTD VMQRIQSSFG TSSSSIPKQP LSMNHLEIPQ LNPNQIRGAA RHFSHFGQNF  60
NGGVAAGTGD GATNKRVGIP PSHPNQIPPI SPYSQIPMSR PSNQQMGSQS FHSGPTHSRS  120
LSQPSSFFSL DSLPPLSPSP FRDSSSMAVP DQVSTDVSMD ERDAAASHSL LPPSPFSKAN  180
SPRLGESLPP RKSHRRSSSD IPFGFNTIMQ SSPPLIPLRG SSKPAQLVKK ETSDGNGEGM  240
GERKSEGEVV DDLFSAYMNL DNMDALNPCD GKNNNGNENH EDLDSRASGT KTNGVDSSDN  300
EAESSVNESG NSSRGGMNST EKREGNKRAA GADIAPSGRH YRSVSMDSFI GKLNFGDESP  360
KLPPSPGNRL GQLSPRNSID GNSAAFSLEF GNGEFTEAEL KKIMANEKLA EIAMTDPKRA  420
KRILANRQSA ARSKERKMRY ISELEHKVQT LQTEATTLSA QLTLLQRDSV GLTNQNNELK  480
FRLQAMEQQA QLRDALNEAL TAEVQRLKLA TQQLGGDSDP SKGMVSEPLS VNQQMFQLNI  540
SHQMQKQSPP QPQQQNGNTT AKTELNQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.30330.0boll| ovule
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016685350.10.0PREDICTED: uncharacterized protein LOC107903717
RefseqXP_016685352.10.0PREDICTED: uncharacterized protein LOC107903717
TrEMBLA0A1U8J4T80.0A0A1U8J4T8_GOSHI; uncharacterized protein LOC107903717
STRINGGorai.001G243800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42242757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38900.31e-143bZIP family protein