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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Gh_A13G2205 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family |
BBR-BPC |
| Protein Properties |
Length: 310aa MW: 34849.8 Da PI: 10.0114 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gh_A13G2205 | genome | NAU-NBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 337.9 | 2.7e-103 | 35 | 310 | 16 | 301 |
GAGA_bind 16 paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvenslasalpvgvqvlsgtksidslqq 113
++++l +++++ms++aerda+irern+a+se+k+a+a+rd+a++qrdkalaer+ al+erdn+l+ l+ +en+ ++ p+g+++ +g ++++ + +
Gh_A13G2205 35 QSNALV--MNKKIMSILAERDAAIRERNIAVSERKEALAARDEALQQRDKALAERDSALIERDNALAVLQCRENA--KNFPFGSGIQRGRTCMHLSYH 128
335555..99**************************************************************998..778999999999999995544 PP
GAGA_bind 114 lsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvP 211
++++++ +e++ ++alp+++ ++ + ++ +k+++ +k +k +k kk e+ +++v++e ++ k+e++s ++l +++De+++ vP
Gh_A13G2205 129 --SSDMDETLN--HEMHVTNALPVSTIPSAEGKSCPVKRTKVNKAVSSKSPRKIKKVAEDLNRQVDTEV--RKCKSEWNSEHIGLSLINFDETKISVP 220
..566666555..59******************9999999999999999999*************9999..57************************* PP
GAGA_bind 212 vCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
vCsCtG++r CYkWGnGGWqS+CCtt+iS yPLP+++++r+aR++grKmS+++f+klL++LaaeGyd+s+p+DLk++WA+HGtn+++ti+
Gh_A13G2205 221 VCSCTGVPRHCYKWGNGGWQSSCCTTSISSYPLPQMPNKRHARVGGRKMSGSVFTKLLSRLAAEGYDVSKPLDLKTYWARHGTNRYITIK 310
*****************************************************************************************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0050793 | Biological Process | regulation of developmental process |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0042803 | Molecular Function | protein homodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 310 aa
Download sequence Send
to blast |
MDGAGQLENG RYKLDRYKGA HPPWNMMLQH HVKEQSNALV MNKKIMSILA ERDAAIRERN 60
IAVSERKEAL AARDEALQQR DKALAERDSA LIERDNALAV LQCRENAKNF PFGSGIQRGR 120
TCMHLSYHSS DMDETLNHEM HVTNALPVST IPSAEGKSCP VKRTKVNKAV SSKSPRKIKK 180
VAEDLNRQVD TEVRKCKSEW NSEHIGLSLI NFDETKISVP VCSCTGVPRH CYKWGNGGWQ 240
SSCCTTSISS YPLPQMPNKR HARVGGRKMS GSVFTKLLSR LAAEGYDVSK PLDLKTYWAR 300
HGTNRYITIK
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in sepal and petal vasculature, in anthers, in young rosette, in the lateral and primary roots, and in the whole ovule. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
