PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A13G2218
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Dof
Protein Properties Length: 321aa    MW: 34373.6 Da    PI: 9.4577
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A13G2218genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof1222.1e-3865123462
       zf-Dof   4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                   alkcprC+stntkfCy+nnysl+qPr+fCk+C+ryWt GGalrnvP+Ggg+r+nk+s+
  Gh_A13G2218  65 VALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCKRYWTLGGALRNVPIGGGCRRNKRSK 123
                  679*****************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-3447121IPR003851Zinc finger, Dof-type
PfamPF027012.0E-3266121IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.99467121IPR003851Zinc finger, Dof-type
PROSITE patternPS01361069105IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MVFTSIPVYL DPPNWQQHSN HQAGPGNSVQ HFPPPPLLAP HGAGSIRPGS MADRARLANI  60
SVPEVALKCP RCESTNTKFC YFNNYSLTQP RHFCKTCKRY WTLGGALRNV PIGGGCRRNK  120
RSKGSVPKSP VKGDRQTASG SSNTTISSNS FGRSDILGLG VGPQVPTLRF TAPLHLHNEC  180
GGGTDIGLNY GSVPASVGRT NDNLSYQKGS GLSGAGAAGT SLLSMTGLDQ WRLQQPPQFA  240
FLGASYQVES QGVEPSACGV RPKISSSMAT LIASVKMEDN DQQEVRFSRP FLDVPGNDQY  300
WGGTPWTDLS CFTSSSTKNP L
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00295DAPTransfer from AT2G37590Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016675602.10.0PREDICTED: dof zinc finger protein DOF2.4-like
TrEMBLA0A1U8IBX10.0A0A1U8IBX1_GOSHI; dof zinc finger protein DOF2.4-like
STRINGGorai.001G250600.11e-170(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17132886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37590.13e-50DNA binding with one finger 2.4