PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D01G0012

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 239aa MW: 27555.6 Da PI: 9.539

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D01G0012	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	144.7	5e-45	12	138	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kge 98 pGfrFhPt+eel+ +yL++ v gk l+ +vi ++iy+++PwdLp k +e+ewyfF++ d+k+ +g r+nr+tk+g+Wkatg+d++++s +++ Gh_D01G0012 12 PGFRFHPTEEELLEFYLRNIVYGKMLSY-DVIGFLNIYHHDPWDLPGLSKVGEREWYFFVPIDRKHGKGGRPNRTTKNGFWKATGSDRKIVSLsdQKK 108 9**********************999.99***********8778899*********************************99866778 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 +g kktLvfykgra++g ktdWv +eyrl Gh_D01G0012 109 MIGFKKTLVFYKGRAQRGCKTDWVTNEYRL 138 8*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.01E-52	9	155	IPR003441	NAC domain
PROSITE profile	PS51005	51.609	10	155	IPR003441	NAC domain
Pfam	PF02365	3.8E-23	12	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence Send to blast
MSYQSNPEVE LPGFRFHPTE EELLEFYLRN IVYGKMLSYD VIGFLNIYHH DPWDLPGLSK 60 VGEREWYFFV PIDRKHGKGG RPNRTTKNGF WKATGSDRKI VSLSDQKKMI GFKKTLVFYK 120 GRAQRGCKTD WVTNEYRLPD ATLPKDIVMC KVYRKATSLK VLEQRAAMEE ELKNTSLPSS 180 SSFSSMDTIS FCTPKQDLVV FKKEEDEEAM VKEKRSDGIA KEQKKISSAS LQLTLGNEK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	2e-44	1	155	3	168	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269\|PubMed:26834774}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269\|PubMed:26834774}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC847234	0.0	KC847234.1 Gossypium hirsutum NAC domain protein NAC57 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016715594.1	1e-180	PREDICTED: putative NAC domain-containing protein 94
Swissprot	Q10S65	2e-83	NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBL	A0A1U8LQW4	1e-178	A0A1U8LQW4_GOSHI; putative NAC domain-containing protein 94
STRING	Gorai.002G001900.1	1e-176	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3899	28	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17040.1	2e-96	NAC domain containing protein 36

Publications ? help Back to Top
Hong Y,Zhang H,Huang L,Li D,Song F Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice. Front Plant Sci, 2016. 7: p. 4 [PMID:26834774]