PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D01G0200
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family CO-like
Protein Properties Length: 470aa    MW: 51490.6 Da    PI: 5.8212
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D01G0200genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.11.3e-061251437
     zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                   C+ ++e+ + l+C+ ++  lC  C ++ H+       H
  Gh_D01G0200 12 VPCDFCNEQIAVLYCRADSAKLCLFCDQHVHSAnllsrkH 51
                 57***************************99555565556 PP
2zf-B_box23.51.2e-075496339
     zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                  ++C+++++++++  C +++  lC+dC    H +      H++
  Gh_D01G0200 54 SQICDNCSSEPVSVLCSTDNLVLCQDCDWDAHGScsvsaaHDR 96
                 689************************9999944777777765 PP
3CCT64.24e-22422465144
          CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                  R +a++RYkeK+ktR+++K+irYesRKa+A++R+RvKGrFvk++
  Gh_D01G0200 422 RGNAMQRYKEKKKTRRYDKHIRYESRKARADTRKRVKGRFVKAT 465
                  7789**************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.5E-13956IPR000315B-box-type zinc finger
PROSITE profilePS501199.855956IPR000315B-box-type zinc finger
CDDcd000213.21E-71244No hitNo description
PROSITE profilePS501199.5275299IPR000315B-box-type zinc finger
CDDcd000213.24E-65685No hitNo description
SMARTSM003360.825799IPR000315B-box-type zinc finger
PfamPF062031.8E-16422464IPR010402CCT domain
PROSITE profilePS5101714.912422464IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MVSPVSEGKG AVPCDFCNEQ IAVLYCRADS AKLCLFCDQH VHSANLLSRK HVRSQICDNC  60
SSEPVSVLCS TDNLVLCQDC DWDAHGSCSV SAAHDRTLVE GFSGCPSALE LASVWGFDLE  120
EKKTTDRNWN VCHQDLMMPA VESWLYETSL QEMMVPYESF GCYGETLKKQ NTGSGKCKQV  180
IYKQLVELMK RDLMCGGGGE GVGDGGGGGG GEENLASNVE QNGGFLTQQE VLQPLLEPGT  240
ETQTQALFTS LLMMQTQESE RIVNGGNVVL NGNPNNQTSQ IWDFKLGRLR GQEECSQSRL  300
EEEVGYGGDA AFVIKNFSQC MKETSLTDNG NLMGYPPSKH DLASLNNNDS NHPGASQGPS  360
TSESNNLPIP KPSSGSALGK PKGSTGCNDV HFSEQPFLVR LVDHTTLTAT SKADRELLAQ  420
NRGNAMQRYK EKKKTRRYDK HIRYESRKAR ADTRKRVKGR FVKATEAPDD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.21500.0boll| ovule| root| stem
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ6183330.0JQ618333.1 Gossypium hirsutum constans-like protein 3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001314291.10.0zinc finger protein CONSTANS-LIKE 14-like
TrEMBLA0A1U8M1T30.0A0A1U8M1T3_GOSHI; zinc finger protein CONSTANS-LIKE 14-like
STRINGGorai.002G022300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38712647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33500.21e-109B-box type zinc finger protein with CCT domain