PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D01G0278

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 320aa MW: 36388 Da PI: 9.0092

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D01G0278	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	157.6	5.3e-49	22	155	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 pGfrFhPtdeelv +yLk+kve+k+l++ e ik++diyk++PwdLpk +v + +e+e yfF+kr +ky+++ r+nr+t sg+Wkatg dk+v++++ Gh_D01G0278 22 LPGFRFHPTDEELVGFYLKRKVEKKPLRF-ELIKQIDIYKFDPWDLPKasMVGGgGESESYFFCKRGRKYRNSVRPNRVTGSGFWKATGIDKPVYAQT 118 59***********************99.99***********5343333366699********************************94 PP NAM 97 gel.....vglkktLvfykgrapkgektdWvmheyrl 128 g + +glkktLv+y+g a kg+ktdW+mhe+rl Gh_D01G0278 119 GDHqglacIGLKKTLVYYRGAAGKGTKTDWMMHEFRL 155 44346677*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	51.159	21	188	IPR003441	NAC domain
SuperFamily	SSF101941	1.03E-51	22	188	IPR003441	NAC domain
Pfam	PF02365	1.7E-25	23	155	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
MMNVDDVQGV NDNKADHEDI QLPGFRFHPT DEELVGFYLK RKVEKKPLRF ELIKQIDIYK 60 FDPWDLPKAS MVGGGGESES YFFCKRGRKY RNSVRPNRVT GSGFWKATGI DKPVYAQTGD 120 HQGLACIGLK KTLVYYRGAA GKGTKTDWMM HEFRLPYPHE STTVVAFSNP KFAAQEAEVW 180 TICRIFKRNS SLKKHKQDWR QITAKRASLT TAPTSQTCSV ESKSNVQGKY ITFGSPFIVD 240 YHQYHNDEEK PSTLVNHHNI SGKNQSQWHV TDRMSSAATA QIPSSMAASS SSFSNDDFFT 300 EANWDELKSV VEFALEPFPM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-45	23	194	19	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-45	23	194	19	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-45	23	194	19	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-45	23	194	19	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-45	23	194	22	174	NAC domain-containing protein 19
3swm_B	1e-45	23	194	22	174	NAC domain-containing protein 19
3swm_C	1e-45	23	194	22	174	NAC domain-containing protein 19
3swm_D	1e-45	23	194	22	174	NAC domain-containing protein 19
3swp_A	1e-45	23	194	22	174	NAC domain-containing protein 19
3swp_B	1e-45	23	194	22	174	NAC domain-containing protein 19
3swp_C	1e-45	23	194	22	174	NAC domain-containing protein 19
3swp_D	1e-45	23	194	22	174	NAC domain-containing protein 19
4dul_A	1e-45	23	194	19	171	NAC domain-containing protein 19
4dul_B	1e-45	23	194	19	171	NAC domain-containing protein 19
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, root caps, cotyledons, tips and margin of young leaves, senescent regions of fully expanded leaves and floral tissues, including old sepals, petals, staments, mature anthers and pollen grains. Not detected in the abscission zone of open flowers, emerging lateral roots and root meristematic zones. {ECO:0000269\|PubMed:22345491}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269\|PubMed:22345491}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269\|PubMed:22345491}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC847219	0.0	KC847219.1 Gossypium hirsutum NAC domain protein NAC42 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016724320.1	0.0	PREDICTED: transcription factor JUNGBRUNNEN 1-like isoform X2
Swissprot	Q9SK55	7e-82	NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBL	A0A1U8MC18	0.0	A0A1U8MC18_GOSHI; transcription factor JUNGBRUNNEN 1-like isoform X2
STRING	Gorai.002G036700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM306	28	200

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43000.1	3e-82	NAC domain containing protein 42

Publications ? help Back to Top
Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins. Plant Signal Behav, 2016. 11(6): p. e1181245 [PMID:27159137] Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling. Nat Plants, 2016. 2: p. 16013 [PMID:27249348] Shahnejat-Bushehri S, et al. Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato. Front Plant Sci, 2017. 8: p. 214 [PMID:28326087] Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways. Plant J., 2017. 92(6): p. 1106-1120 [PMID:29032592] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]