PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D01G0542
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NZZ/SPL
Protein Properties Length: 325aa    MW: 35025.4 Da    PI: 8.463
Description NZZ/SPL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D01G0542genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NOZZLE53.19.2e-173132339314
       NOZZLE  39 tkksrgrkpgsktaqqkqkkptlrgmgvaklerfiieeekkkl.vvatvgdtssvaaisntatrlpvpvdrgvvlqgfps.................. 117
                   k  +grk   k   q  kk   rgmgva+ler +   e +   ++   g  +        a+ +  pv +gv   g p                   
  Gh_D01G0542  31 VKSNKGRKSSGKGPYQ--KKQPQRGMGVAQLERLRKMSETRTTtTINQFGCEA------MGASNV--PVLHGVANYGVPPmminggsgglwgwgadtd 118
                  4556899998887765..44457***********9888877662344444333......333444..4778888888887788888788888877777 PP

       NOZZLE 118 slgssrilc.ggvg..sgqvmi.dpvispwgfvetsa..tthelssisnpqmynassnnrcdtcfkkkrldgdqnnvvrsngggfskytmi.pppmng 208
                   l  +r++  gg g    qv++ +p     g   +s   +++elss+++ q   +  ++ cd cfkkkr + ++    + ngg f ++    p     
  Gh_D01G0542 119 GLMMQRVVGnGGFGgfNSQVLVgNPGNVQVGCAAASVveASKELSSMPKFQH--CKPEH-CDLCFKKKRCNMEN---GKFNGGLFNQFGQAfPNKGTD 210
                  4444665532444422245555345444444443332112459**9987654..44555.**********9988...789********9873555555 PP

       NOZZLE 209 ydeyllqsdhhqrsqgfl...ydqriaraasvsaasasinpyfneatnltgsreefgsvlegnprngsrgvkeyeffpgkydervs.k.......vak 295
                  +  + l+++  q ++  +   +  r ar+a   aa+  +n  +ne+ +    + +      gn       v eyeffpgk +  ++ k       +  
  Gh_D01G0542 211 FHGWNLENN--QNTNEEMmkgFSARAARSAYAYAAAGQMN--INETVDVVAIHRK------GNSFGTGSYVMEYEFFPGKNGRNTAsKewefpeeASS 298
                  666666655..43333321225788999997777777776..6887777665544......44445556799*******9875433121111111222 PP

       NOZZLE 296 vaslvg......dcspntidlslkl 314
                   a +vg      + +pn +dlslkl
  Gh_D01G0542 299 SAITVGgeasyaNNAPNCVDLSLKL 323
                  2223332211114568999999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF087448.0E-1929323IPR014855Plant transcription factor NOZZLE
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MATSLTLLTP NTDNPTTKPM EDEAKPAMEF VKSNKGRKSS GKGPYQKKQP QRGMGVAQLE  60
RLRKMSETRT TTTINQFGCE AMGASNVPVL HGVANYGVPP MMINGGSGGL WGWGADTDGL  120
MMQRVVGNGG FGGFNSQVLV GNPGNVQVGC AAASVVEASK ELSSMPKFQH CKPEHCDLCF  180
KKKRCNMENG KFNGGLFNQF GQAFPNKGTD FHGWNLENNQ NTNEEMMKGF SARAARSAYA  240
YAAAGQMNIN ETVDVVAIHR KGNSFGTGSY VMEYEFFPGK NGRNTASKEW EFPEEASSSA  300
ITVGGEASYA NNAPNCVDLS LKLSY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016702407.10.0PREDICTED: protein SPOROCYTELESS-like isoform X1
TrEMBLA0A1U8KIY50.0A0A1U8KIY5_GOSHI; protein SPOROCYTELESS-like isoform X1
STRINGGorai.002G077500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1863967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27330.13e-08sporocyteless (SPL)