PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D01G0564
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 584aa    MW: 64964.3 Da    PI: 6.464
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D01G0564genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS425.83.5e-1302115801373
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  l++lL++cA+++s++++ + ++l+a+ +  +s +g+p+qRl ay++e+L ar   s+s++y+al+++e +    ++ l+++++++e++P+lkf+h++a
  Gh_D01G0564 211 LKQLLIACAKVLSENNMDEFDKLIAKARGAVSISGEPVQRLGAYMVEGLVARKEASGSSIYRALHCREPE---GKDLLSYMQVLYEICPYLKFGHMAA 305
                  689******************************************************************9...9************************ PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                  N aI ea  +e+r+HiiDf+i qG+QW++LlqaLa+Rp+g+p++RiTg+++p s+  +   le++++rL+ + e++++p+ef+  +     d++ ++L
  Gh_D01G0564 306 NGAIAEACRTEDRIHIIDFQIAQGTQWMTLLQALAARPGGAPHVRITGIDDPISKyaRGGGLEAVKRRLEAISEKFNIPVEFQG-MPVFAPDITRDML 402
                  ***************************************************999989999************************.6888999****** PP

         GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                  +v+pgEalaVn+ lqlh+++desv+++++rd +L++vkslsPkv ++veqe+++n+++Fl rf+e+leyy a+f+s++++lpr+ +er++vE+++l+r
  Gh_D01G0564 403 DVRPGEALAVNFPLQLHHTPDESVDVNNPRDGLLRMVKSLSPKVTTLVEQESNTNTAPFLPRFIETLEYYLAMFESIDETLPRDRKERVNVEEHCLAR 500
                  ************************************************************************************************** PP

         GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                  +ivn++aceg+er+erhe ++kW++rl++aGF+++pls+++++ ++ llr ++ + y++ e++g+++lgWkdr+L+s+SaW
  Gh_D01G0564 501 DIVNIIACEGKERVERHELFGKWKSRLTMAGFRQYPLSSYVNSVIRGLLRCYS-KHYTLVEKDGAMLLGWKDRNLISASAW 580
                  *************************************************9999.55************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.533185562IPR005202Transcription factor GRAS
PfamPF035141.2E-127211580IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    Send to blast
MDSHQLFGYG VTGAGLSYST FPSIPNRLFS SLKSDLGNSP NSPFFTPFDC DTNTTLSDSQ  60
EQHSSTENLS GLSPSCNSSL ESNTYFHRLS PSLDCRSESL LFSSGGTSYT QDANSGHKVI  120
YTLQELETAL MAPDENEDLT TPSVSHGESS RPQTAGQRSR AWSRGRQGSL ALLPQTSFVS  180
KHRQSTEVSH VEKRQKSIED FSWLGIPPGN LKQLLIACAK VLSENNMDEF DKLIAKARGA  240
VSISGEPVQR LGAYMVEGLV ARKEASGSSI YRALHCREPE GKDLLSYMQV LYEICPYLKF  300
GHMAANGAIA EACRTEDRIH IIDFQIAQGT QWMTLLQALA ARPGGAPHVR ITGIDDPISK  360
YARGGGLEAV KRRLEAISEK FNIPVEFQGM PVFAPDITRD MLDVRPGEAL AVNFPLQLHH  420
TPDESVDVNN PRDGLLRMVK SLSPKVTTLV EQESNTNTAP FLPRFIETLE YYLAMFESID  480
ETLPRDRKER VNVEEHCLAR DIVNIIACEG KERVERHELF GKWKSRLTMA GFRQYPLSSY  540
VNSVIRGLLR CYSKHYTLVE KDGAMLLGWK DRNLISASAW HCDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A3e-6321858025377Protein SCARECROW
5b3h_D3e-6321858025377Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.5900.0boll| ovule| root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO783290920.0
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016728914.10.0PREDICTED: scarecrow-like protein 21
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A1U8MTN70.0A0A1U8MTN7_GOSHI; scarecrow-like protein 21
STRINGGorai.002G080600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM145381022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.21e-174GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]