PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D01G0798
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 260aa    MW: 29397.8 Da    PI: 4.916
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D01G0798genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.99.8e-10143186755
                  HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  ++ r RR++i ++ +eL +l+P        K++ ae+L+ A +YIk+Lq
  Gh_D01G0798 143 IAARERRRKITKKTQELGKLVPGG-----SKMNTAEMLQSAFKYIKYLQ 186
                  56799*****************95.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.29E-10134189No hitNo description
SuperFamilySSF474592.22E-12135195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.779136185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-11142191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-11142193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-7144186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MVLSSYFDCQ TDVPMYEIKT VEAESETQLA APDGLECYWN AFELPYTFPA SYLDPQNYTS  60
LLPLYSIPPE VIPYETLSSY PCPKRHKLIE DHYCSDLMPG VFDGVAVSPC PLLEDHQINL  120
EGMKTVGNCN KISEEKCVSV QSIAARERRR KITKKTQELG KLVPGGSKMN TAEMLQSAFK  180
YIKYLQAQVG TLQVMDSFPE NEKRSWDGKM EMVTSPKVQE KLYMEDKCLV AKDAVLSLTT  240
LFKPPLSHEL TRLLSLPSND
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012462937.10.0PREDICTED: transcription factor bHLH53-like
TrEMBLA0A2P5S3Y00.0A0A2P5S3Y0_GOSBA; Uncharacterized protein
STRINGGorai.002G107000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1695449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34820.14e-24bHLH family protein