PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D01G0823

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GRAS

Protein Properties

Length: 528aa MW: 59066.9 Da PI: 4.6347

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D01G0823	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	362.6	5.6e-111	150	520	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar..svselykalppsetsekn.sseelaalklfsevsPilkfsh 95 lv+lLl+cAeav +d +la+++L+++ a+p gd++qR+ +f+ +L++rl+ +v++ + ++ + ++ +e++ a++l+++++P++ f++ Gh_D01G0823 150 LVHLLLACAEAVGCRDIHLATSMLSQIGASATPLGDSLQRVSYCFATGLKSRLSLlqNVNGNGTITNCAIDVPMIaREEKMEAFQLLYQTTPYIAFGF 247 68************************************************987213333333334444444436899999************ PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak.rledlele 192 ++aN+aI +a++g+ +HiiD+++++ lQWp+L++aLasRpegpp+lRiT++ s e + ele+ + L + A++l + +ef+++ + + + ++ e Gh_D01G0823 248 MAANEAICQAAQGKGSLHIIDLGMKHTLQWPSLIRALASRPEGPPTLRITALTSDE--DLVELEASMKSLVEDASSLSIAMEFHMISEPvTPSLMTRE 343 **************************************************55..99*********************7444588899* PP GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErell 290 +L++++gE+l +n+v++lh+ ++es + + ++L+++k+l P ++++veq+a+hn++ Fl rfle+l+yysa+fdslea+lpr+s +r+k+Er + Gh_D01G0823 344 NLNLREGESLYINSVMHLHKYVKESRGSLK---AILQAIKKLGPALLTMVEQDANHNGPFFLGRFLESLQYYSAIFDSLEASLPRHSPQRMKIERLHF 438 ********************88776666...9************************************************************ PP GRAS 291 greivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++ei+n+va eg++r erhe++ +Wr++l++aGF+ + l+ +qa+++l+ ++ dgy++ +e+g+l+lgWk+rpL+ +SaW+ Gh_D01G0823 439 AEEIRNIVAYEGTDRMERHERADQWRRQLGRAGFQVMGLK--CLSQARMMLSVYGCDGYTLGSEKGCLLLGWKGRPLMLASAWQ 520 ********************************9985..89*************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	53.333	124	502	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.9E-108	150	520	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 528 aa Download sequence Send to blast
MEGFNGWLYE SFNHDFAIRR FCSARVELEQ WELGDAMNNE IEPFFPDDEI STPHLAASEV 60 DDFVDSFINM DYDVDDDGDG DDKDDRNSKK QQNFHHFQDK IEAFSIVNDD SLMIEGDELE 120 MSSSCEDLGA NEMVPSIEEV SHGVDQGLHL VHLLLACAEA VGCRDIHLAT SMLSQIGASA 180 TPLGDSLQRV SYCFATGLKS RLSLLQNVNG NGTITNCAID VPMIAREEKM EAFQLLYQTT 240 PYIAFGFMAA NEAICQAAQG KGSLHIIDLG MKHTLQWPSL IRALASRPEG PPTLRITALT 300 SDEDLVELEA SMKSLVEDAS SLSIAMEFHM ISEPVTPSLM TRENLNLREG ESLYINSVMH 360 LHKYVKESRG SLKAILQAIK KLGPALLTMV EQDANHNGPF FLGRFLESLQ YYSAIFDSLE 420 ASLPRHSPQR MKIERLHFAE EIRNIVAYEG TDRMERHERA DQWRRQLGRA GFQVMGLKCL 480 SQARMMLSVY GCDGYTLGSE KGCLLLGWKG RPLMLASAWQ LHNASSAY

Sequence ? help Back to Top

Protein Sequence Length: 528 aa Download sequence Send to blast

MEGFNGWLYE SFNHDFAIRR FCSARVELEQ WELGDAMNNE IEPFFPDDEI STPHLAASEV  60
DDFVDSFINM DYDVDDDGDG DDKDDRNSKK QQNFHHFQDK IEAFSIVNDD SLMIEGDELE  120
MSSSCEDLGA NEMVPSIEEV SHGVDQGLHL VHLLLACAEA VGCRDIHLAT SMLSQIGASA  180
TPLGDSLQRV SYCFATGLKS RLSLLQNVNG NGTITNCAID VPMIAREEKM EAFQLLYQTT  240
PYIAFGFMAA NEAICQAAQG KGSLHIIDLG MKHTLQWPSL IRALASRPEG PPTLRITALT  300
SDEDLVELEA SMKSLVEDAS SLSIAMEFHM ISEPVTPSLM TRENLNLREG ESLYINSVMH  360
LHKYVKESRG SLKAILQAIK KLGPALLTMV EQDANHNGPF FLGRFLESLQ YYSAIFDSLE  420
ASLPRHSPQR MKIERLHFAE EIRNIVAYEG TDRMERHERA DQWRRQLGRA GFQVMGLKCL  480
SQARMMLSVY GCDGYTLGSE KGCLLLGWKG RPLMLASAWQ LHNASSAY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	4e-61	157	519	25	377	Protein SCARECROW
5b3h_D	4e-61	157	519	25	377	Protein SCARECROW
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012463528.1	0.0	PREDICTED: DELLA protein RGL1-like
TrEMBL	A0A0D2QB36	0.0	A0A0D2QB36_GOSRA; Uncharacterized protein
STRING	Gorai.002G110100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17612	9	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66350.1	4e-80	RGA-like 1