PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D01G0835

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 126aa MW: 14553.6 Da PI: 7.4996

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D01G0835	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	58.3	2.6e-18	10	92	1	70
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.............kvka.eekewyfFskrdkkyat 70 +ppGfrFhPt+eel+ +yL+kkv+ + +el +vi+evd++k+ PwdL+ k+ + +++wy Fs+ ++++++ Gh_D01G0835 10 VPPGFRFHPTEEELLYYYLRKKVSFEAIEL-DVIREVDLNKLVPWDLKGhysyitlryadkcKIGSgPQNDWYCFSHIATRTRN 92 69**************************.9***********945899999888866444434569**998877655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.7E-17	6	97	IPR003441	NAC domain
PROSITE profile	PS51005	17.346	10	126	IPR003441	NAC domain
Pfam	PF02365	1.8E-9	11	87	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 126 aa Download sequence Send to blast
MATRNGQLSV PPGFRFHPTE EELLYYYLRK KVSFEAIELD VIREVDLNKL VPWDLKGHYS 60 YITLRYADKC KIGSGPQNDW YCFSHIATRT RNIQPELEQT GQPYLVFGRL QGETGLSTLA 120 TPRELG

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in leaf blades, developing flowers, embryo and callus. Weakly expressed in roots. {ECO:0000269\|PubMed:10660065}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in stress response. {ECO:0000250\|UniProtKB:Q7F2L3}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010096002.2	3e-38	protein SOMBRERO
Swissprot	Q5Z6B6	6e-35	NAC76_ORYSJ; NAC domain-containing protein 76
TrEMBL	A0A0D2R439	2e-72	A0A0D2R439_GOSRA; Uncharacterized protein (Fragment)
STRING	Gorai.002G111200.1	1e-72	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7967	13	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79580.3	2e-36	NAC family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]