PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D01G0942
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 469aa    MW: 51335.3 Da    PI: 9.9268
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D01G0942genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.00038220242223
                  EETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                   C+ Cg++F+  ++L+ H+ + H
  Gh_D01G0942 220 ACSQCGEVFPKIESLELHQAVrH 242
                  6******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280219242IPR007087Zinc finger, C2H2
PROSITE profilePS501578.808219247IPR007087Zinc finger, C2H2
SuperFamilySSF563991.15E-23244462No hitNo description
Gene3DG3DSA:3.90.228.104.4E-15246462IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MQRPHSHPPQ FSSLLPLSDP TPFAHKSYKK RERAESTLVL LFIMALLTFL PEAAAEPMKQ  60
QPKRRRKQVK KQKQPTTSSW DQIKNLLTCK QMEGSKVHDP SKNNNPAPPH HHQHGYSKLG  120
SSCSSICSFR DVVHGNTRVV HRADNSPESS TIGQETALLR RKAVNGSSSR SLSGSTRSNN  180
STTTSSSSRA IQFRKLSGCY ECHTIVDPSR YPSSRTSICA CSQCGEVFPK IESLELHQAV  240
RHAVSELGPE DSGRNIVEII FKSSWLKKDN PICKIERILK VHNNQRTIQR FEDCRDAVKT  300
RAINSTRKNP RCAADGNELL RFHCTTLSCS LGARGSSSLC GSIPGCGVCT IIRQGFQNKG  360
GGTAPAAEFK GVVTTASSGR AHDSIKRTDG RRAMLVCRVI AGRVKRVADE APPLEDENSS  420
GVSSSAGSYD SVAAYAGVYS NLEELVVFNA RAILPCFVVI YKALECGLI
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.99570.0ovule
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO783255130.0
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3949951e-140GQ394995.1 Gossypium hirsutum cultivar Delta Opal clone MONCS2018 SSR marker DPL0425 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012465784.10.0PREDICTED: uncharacterized protein LOC105784443
TrEMBLA0A0D2MA040.0A0A0D2MA04_GOSRA; Uncharacterized protein
STRINGGorai.002G123600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19162880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-164C2H2-like zinc finger protein