PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D01G0961
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family BBR-BPC
Protein Properties Length: 441aa    MW: 48505.1 Da    PI: 9.717
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D01G0961genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind388.59.9e-1191064411301
    GAGA_bind   1 mdddgsre..rnkg.yyepa...aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla 92 
                  mdd g+re  r k+ +y+ a     +++   +q+m+++aerda+i+ernlalsekkaa+aerdmaflqrd+a+aern+a+ erdn++++l+++ensla
  Gh_D01G0961 106 MDDGGHREngRLKAdQYRTAqgqWLMHQPSMKQIMAIMAERDAAIQERNLALSEKKAAIAERDMAFLQRDAAIAERNNAIAERDNAIANLQYRENSLA 203
                  99***999999999999955443345556667****************************************************************99 PP

    GAGA_bind  93 ....salpvgvqvlsgtksidslqq.lse.pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkak.kkkkksekskkkvkkesa 183
                      s++p+g ++++g+k++++ qq +++ p++++ +++ re++ +++lp++  ++ea ++++ k+ ++ak+  ++k+  k+ kk ++++++++k   
  Gh_D01G0961 204 sgniSSCPPGFHISRGVKHMQHPQQnVHHlPHISEVPYNSREMHASDVLPVTPGTSEAAKSRQGKRAKEAKVIASNKKAtKPPKKVKQENEDSDKLM- 300
                  99999********************76779********************99888888777777766666654433332244444444444333333. PP

    GAGA_bind 184 der.........................skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRia 256
                    +                         +k+++k  dl+ln+v +D+st+ +PvCsCtG+lrqCYkWGnGGWqS+CCtt++S+yPLP+++++r+aRi+
  Gh_D01G0961 301 --SgkshewkggqdvggagddlnkqlvtTKSDWKGKDLGLNQVVFDDSTMAPPVCSCTGVLRQCYKWGNGGWQSSCCTTSLSMYPLPAVPNKRHARIG 396
                  ..13346799**************************************************************************************** PP

    GAGA_bind 257 grKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                  grKmS++af+klL +LaaeGydlsnpvDLk+hWAkHGtn+++ti+
  Gh_D01G0961 397 GRKMSGSAFNKLLTRLAAEGYDLSNPVDLKHHWAKHGTNRYITIK 441
                  ********************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012264.2E-169106441IPR010409GAGA-binding transcriptional activator
PfamPF062172.1E-101106441IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MEGSSGKGYA WAISAGFNAA FAAVAAKFLL HPVIRYGLVV FFNVIMWGCY VNSLKALSSL  60
QATVTNFATN FLTSGLAGFF LFEELLSFKS SETVFVDLNN FLESSMDDGG HRENGRLKAD  120
QYRTAQGQWL MHQPSMKQIM AIMAERDAAI QERNLALSEK KAAIAERDMA FLQRDAAIAE  180
RNNAIAERDN AIANLQYREN SLASGNISSC PPGFHISRGV KHMQHPQQNV HHLPHISEVP  240
YNSREMHASD VLPVTPGTSE AAKSRQGKRA KEAKVIASNK KATKPPKKVK QENEDSDKLM  300
SGKSHEWKGG QDVGGAGDDL NKQLVTTKSD WKGKDLGLNQ VVFDDSTMAP PVCSCTGVLR  360
QCYKWGNGGW QSSCCTTSLS MYPLPAVPNK RHARIGGRKM SGSAFNKLLT RLAAEGYDLS  420
NPVDLKHHWA KHGTNRYITI K
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1279287KKATKPPKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.48261e-139boll| ovule
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in sepal vasculature, in young rosette, in the lateral and tip of primary roots, and in ovule at the exception of the outer integument. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016702975.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like isoform X1
RefseqXP_016702976.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like isoform X1
RefseqXP_016702977.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like isoform X1
RefseqXP_016702979.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like isoform X1
RefseqXP_017642293.10.0PREDICTED: protein BASIC PENTACYSTEINE6
RefseqXP_017642294.10.0PREDICTED: protein BASIC PENTACYSTEINE6
RefseqXP_017642295.10.0PREDICTED: protein BASIC PENTACYSTEINE6
RefseqXP_017642296.10.0PREDICTED: protein BASIC PENTACYSTEINE6
RefseqXP_017642298.10.0PREDICTED: protein BASIC PENTACYSTEINE6
SwissprotQ8L9991e-149BPC6_ARATH; Protein BASIC PENTACYSTEINE6
TrEMBLA0A2P5Q1770.0A0A2P5Q177_GOSBA; Uncharacterized protein
STRINGGorai.002G124900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61692647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.11e-137basic pentacysteine 6