PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D01G0974

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 187aa MW: 21738.5 Da PI: 7.1632

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D01G0974	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	35	3.2e-11	63	116	5	58
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 ++ +r+++NRe+ArrsR RK+++++ L L + N + ++ ++ ++ + Gh_D01G0974 63 RKRKRMESNRESARRSRMRKQKYLDDLMAQLTLLRKDNNQILTSINFITHHYFN 116 6789**********************************9998888877766655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.3E-17	59	123	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.22	61	124	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	5.63E-12	63	116	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.9E-9	63	135	No hit	No description
Pfam	PF00170	2.0E-9	63	115	IPR004827	Basic-leucine zipper domain
CDD	cd14702	7.48E-18	64	114	No hit	No description
PROSITE pattern	PS00036	0	66	81	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence Send to blast
MSPVVSEILR SGFMINSSLR RRTHLVQSFS VVFLHCGNSN SSGSTLLQIS GSEEDLHQLM 60 EERKRKRMES NRESARRSRM RKQKYLDDLM AQLTLLRKDN NQILTSINFI THHYFNIEAE 120 NSVLRAQFME LSQRLDSLNH ILNYLNDPTL NNGIWVYETE PFETSADSFT NFTLNQPIVA 180 SADIFQY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	62	83	RKRKRMESNRESARRSRMRKQK
2	75	82	RRSRMRKQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.5267	0.0	boll

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in the micropylar endosperm and radicle tip in early germinating seeds. {ECO:0000269\|PubMed:23461773}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269\|PubMed:23461773}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016722118.1	1e-108	PREDICTED: bZIP transcription factor 53-like
Swissprot	C0Z2L5	2e-41	BZP44_ARATH; bZIP transcription factor 44
TrEMBL	A0A0D2MA61	1e-134	A0A0D2MA61_GOSRA; Uncharacterized protein
STRING	Gorai.002G126500.1	1e-134	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM501	28	154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75390.1	1e-43	basic leucine-zipper 44

Publications ? help Back to Top
Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Pedrotti L, et al. Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness. Plant Cell, 2018. 30(2): p. 495-509 [PMID:29348240]