PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D01G1022

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Protein Properties

Length: 225aa MW: 25784.1 Da PI: 10.4454

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D01G1022	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	53.8	3.4e-17	129	218	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 f+k +++s+v+ +l lp +f++++ +k ++ +tl de+g ++ + k+ + l++GWk+F+ a++L +gD vvF+l +r++f +v ++r Gh_D01G1022 129 FIKSMLQSHVTGGFWLGLPVHFCKTNL-PK-RDEVMTLVDEEGHEYPTIY--LAKKTG--LSGGWKGFAVAHRLVDGDAVVFQLLQRTTF--KVYIIR 218 89*******************9884.33.5568***********..555444..9********************9998888..888776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	4.9E-24	122	220	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.4E-20	123	220	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.40E-25	127	218	No hit	No description
Pfam	PF02362	5.0E-16	129	218	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.28	129	220	IPR003340	B3 DNA binding domain
SMART	SM01019	4.9E-22	129	220	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MVVAKEKMMS YEEIRQKRVE ENKKRMEALN LPQLSTLLHT PSFKPSPRKQ MKLRTVEKQL 60 VVVRRSSRVA NKPAPVYQEV LVDKVMIPRR VSKHRDLSNR VYASDEARAE ALEKAEKLES 120 GLDPHFPVFI KSMLQSHVTG GFWLGLPVHF CKTNLPKRDE VMTLVDEEGH EYPTIYLAKK 180 TGLSGGWKGF AVAHRLVDGD AVVFQLLQRT TFKVYIIRVK GSEQS

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	73848012	0.0

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016701916.1	1e-167	PREDICTED: B3 domain-containing protein At5g42700-like
Refseq	XP_016706677.1	1e-167	PREDICTED: B3 domain-containing protein At5g42700-like
Refseq	XP_016706681.1	1e-167	PREDICTED: B3 domain-containing protein At5g42700-like
Swissprot	Q9FMZ4	3e-78	Y5270_ARATH; B3 domain-containing protein At5g42700
TrEMBL	A0A1U8KH99	1e-165	A0A1U8KH99_GOSHI; B3 domain-containing protein At5g42700-like
STRING	Gorai.002G131600.1	1e-166	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3744	27	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42700.1	1e-73	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]