PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D01G1055

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

WOX

Protein Properties

Length: 217aa MW: 24955.1 Da PI: 9.5082

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D01G1055	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	67.8	1.4e-21	83	142	3	57
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eq+ +Le l++ r+p+a+++e++++kl +++ ++V++WFqN++a+e++ Gh_D01G1055 83 TRWNPTQEQIGILEMLYRGgMRTPNAQQIEQITEKLgkygKIEGKNVFYWFQNHKARERQ 142 7***************99************************************97 PP
2	Wus_type_Homeobox	118	4.4e-38	83	144	4	65
Wus_type_Homeobox 4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 tRW+Pt+eQi iLe+ly+ G+rtPn+++i++it++L +yGkie+kNVfyWFQN+kaRerqkq Gh_D01G1055 83 TRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITEKLGKYGKIEGKNVFYWFQNHKARERQKQ 144 8***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.12E-13	74	148	IPR009057	Homeodomain-like
PROSITE profile	PS50071	10.317	78	143	IPR001356	Homeobox domain
SMART	SM00389	8.3E-8	80	147	IPR001356	Homeobox domain
CDD	cd00086	5.03E-5	83	144	No hit	No description
Pfam	PF00046	3.1E-19	83	142	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.6E-8	84	142	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MGNMKMHQLA CGFWEQQPLL SLGCKRLRPL APKLHSSSTY TTVSSFDLKS FIRPDSGPRK 60 LGNGPSEDNN RHSPPVETHP GGTRWNPTQE QIGILEMLYR GGMRTPNAQQ IEQITEKLGK 120 YGKIEGKNVF YWFQNHKARE RQKQKRSSLG LTHCPRSSAP ITPITLDTRV ETMEREEDSP 180 CKRKCRSWSF EEEDSRSSSK EDENRTLELF PLHPESR

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.15831	0.0	leaf\| root

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016706758.1	1e-161	PREDICTED: WUSCHEL-related homeobox 4-like
Swissprot	Q6X7J9	3e-71	WOX4_ARATH; WUSCHEL-related homeobox 4
TrEMBL	A0A1U8L082	1e-160	A0A1U8L082_GOSHI; WUSCHEL-related homeobox 4-like
STRING	Gorai.002G134800.1	1e-160	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5980	27	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G46480.1	1e-66	WUSCHEL related homeobox 4

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605] Guo X, et al. Identification of cyst nematode B-type CLE peptides and modulation of the vascular stem cell pathway for feeding cell formation. PLoS Pathog., 2017. 13(2): p. e1006142 [PMID:28158306] Denis E, et al. WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis. Plant J., 2017. 90(3): p. 560-572 [PMID:28218997] Kucukoglu M,Nilsson J,Zheng B,Chaabouni S,Nilsson O WUSCHEL-RELATED HOMEOBOX4 (WOX4)-like genes regulate cambial cell division activity and secondary growth in Populus trees. New Phytol., 2017. 215(2): p. 642-657 [PMID:28609015] Yamaguchi YL, et al. Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots. Front Plant Sci, 2017. 8: p. 1195 [PMID:28747918]