PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D01G1068

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 163aa MW: 19027.2 Da PI: 9.2476

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D01G1068	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	43	1e-13	54	108	3	57
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 + k++rrk++NRe+A+rsR RKk ++e+L++ v ++ eN++Lk++l +++ Gh_D01G1068 54 DEKKQRRKISNRESAKRSRWRKKRYLENLTNQVNKMNIENRRLKNRLHLVLNQCH 108 569*******************************************998888885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	3.3E-12	52	107	No hit	No description
SMART	SM00338	9.3E-14	52	116	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.611	54	100	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.3E-10	56	107	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	6.68E-11	56	108	No hit	No description
CDD	cd14702	1.97E-15	57	108	No hit	No description
PROSITE pattern	PS00036	0	59	74	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 163 aa Download sequence Send to blast
MFSAEEAVGS QLPVHESGFT PEELNELLSF FESNEPVSSN SSSENSSRAI YSPDEKKQRR 60 KISNRESAKR SRWRKKRYLE NLTNQVNKMN IENRRLKNRL HLVLNQCHVV WVDNEQLRSE 120 SFALWAKLLD LYWTLAAMQC NHDNSRHSLS CFNSNKLSSH SIN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	58	76	RRKISNRESAKRSRWRKKR
2	73	96	RKKRYLENLTNQVNKMNIENRRLK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016707207.1	1e-116	PREDICTED: basic leucine zipper 8-like
TrEMBL	A0A1U8KXP3	1e-114	A0A1U8KXP3_GOSHI; basic leucine zipper 8-like
STRING	Gorai.002G135900.1	1e-113	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12232	24	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49760.1	1e-17	basic leucine-zipper 5