PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D01G1287
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 130aa    MW: 14800.8 Da    PI: 8.4932
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D01G1287genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox611.8e-192073356
                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                 k+ +++ +q+++Le+ F   +++  e++ +LA++lgL+ rqV +WFqNrRa++k
  Gh_D01G1287 20 KKKRLSMHQVKALEKNFDVGNKLEPERKVKLAEELGLQPRQVAIWFQNRRARWK 73
                 566799***********************************************9 PP
2HD-ZIP_I/II110.41.2e-351990172
  HD-ZIP_I/II  1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkrayda 72
                 ekk+rls +qvk+LE++F+  +kLeperKv+la+eLglqprqva+WFqnrRAR+ktk lEk+y++Lk++ ++
  Gh_D01G1287 19 EKKKRLSMHQVKALEKNFDVGNKLEPERKVKLAEELGLQPRQVAIWFQNRRARWKTKVLEKNYAMLKANREK 90
                 69*****************************************************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.28E-191375IPR009057Homeodomain-like
PROSITE profilePS5007117.411575IPR001356Homeobox domain
SMARTSM003893.0E-171879IPR001356Homeobox domain
PfamPF000469.9E-172073IPR001356Homeobox domain
CDDcd000867.46E-162075No hitNo description
Gene3DG3DSA:1.10.10.601.3E-192774IPR009057Homeodomain-like
PRINTSPR000312.5E-64655IPR000047Helix-turn-helix motif
PROSITE patternPS0002705073IPR017970Homeobox, conserved site
PRINTSPR000312.5E-65571IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MLDGLDEENS LEEGGQATEK KKRLSMHQVK ALEKNFDVGN KLEPERKVKL AEELGLQPRQ  60
VAIWFQNRRA RWKTKVLEKN YAMLKANREK EPPRNCSDCV HSPSDNRQLS GDDCPLVPPK  120
SSPEMTVNGS
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Localized primarily to the hypocotyl of germinating seedlings. {ECO:0000269|PubMed:12678559}.
UniprotTISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a positive regulator of ABA-responsiveness, mediating the inhibitory effect of ABA on growth during seedling establishment. Binds to the DNA sequence 5'-CAATNATTG-3'. {ECO:0000269|PubMed:12678559}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:12678559, ECO:0000269|PubMed:16055682}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2431211e-139AC243121.1 Gossypium raimondii clone GR__Ba0142D21-hnv, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012474465.15e-88PREDICTED: homeobox-leucine zipper protein ATHB-6-like isoform X1
RefseqXP_012474467.15e-88PREDICTED: homeobox-leucine zipper protein ATHB-6-like isoform X1
RefseqXP_012474468.15e-88PREDICTED: homeobox-leucine zipper protein ATHB-6-like isoform X1
RefseqXP_012474469.15e-88PREDICTED: homeobox-leucine zipper protein ATHB-6-like isoform X2
RefseqXP_016696668.11e-88PREDICTED: homeobox-leucine zipper protein ATHB-5-like
SwissprotP466679e-36ATHB5_ARATH; Homeobox-leucine zipper protein ATHB-5
TrEMBLA0A2P5R8023e-90A0A2P5R802_GOSBA; Uncharacterized protein
STRINGGorai.006G273000.18e-89(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54528143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65310.23e-38homeobox protein 5
Publications ? help Back to Top
  1. Cassan-Wang H, et al.
    Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis.
    Front Plant Sci, 2013. 4: p. 189
    [PMID:23781226]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]
  4. Stamm P, et al.
    The Transcription Factor ATHB5 Affects GA-Mediated Plasticity in Hypocotyl Cell Growth during Seed Germination.
    Plant Physiol., 2017. 173(1): p. 907-917
    [PMID:27872245]