PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D01G1463

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

WOX

Protein Properties

Length: 292aa MW: 33309.1 Da PI: 5.705

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D01G1463	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	69.5	4.2e-22	65	124	3	57
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eql +Leel+++ +r+psa++++++A++l +++ ++V++WFqN++a+e++ Gh_D01G1463 65 SRWNPTPEQLLTLEELYRRgTRTPSAAQIQQIATRLrrfgKIEGKNVFYWFQNHKARERQ 124 7***************99************************************97 PP
2	Wus_type_Homeobox	112.3	2.6e-36	64	126	3	65
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++RW+PtpeQ+ Leely++G+rtP++++iq+i+++L+++Gkie+kNVfyWFQN+kaRerqk+ Gh_D01G1463 64 SSRWNPTPEQLLTLEELYRRGTRTPSAAQIQQIATRLRRFGKIEGKNVFYWFQNHKARERQKR 126 68***********************************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	11.337	60	125	IPR001356	Homeobox domain
SMART	SM00389	2.2E-5	62	129	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.28E-12	63	129	IPR009057	Homeodomain-like
Pfam	PF00046	1.1E-19	65	124	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	5.0E-9	65	124	IPR009057	Homeodomain-like
CDD	cd00086	2.59E-6	66	126	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MGYPHITDLN LSHSFNIAKP SPLDPNPTNT TNLLALNHGD LASNANEGSP TTELNSQQQQ 60 PLGSSRWNPT PEQLLTLEEL YRRGTRTPSA AQIQQIATRL RRFGKIEGKN VFYWFQNHKA 120 RERQKRRRQL KTEEQQQQQC DTESLEKKES VFSLPIGCCQ IKPTNEGSPS NVSKFSEEFI 180 WTHGFAKSEG NEWMEIEEKE LRMELCCTPI DLTNTTITAS LDTQKNLCSF KPHQEKITTL 240 EDENREDQTL ELFPLGSNDG NGINISNKDT QVPIRAISTT PNQYFEFLPL KN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012467283.1	0.0	PREDICTED: WUSCHEL-related homeobox 6
TrEMBL	A0A0D2Q852	0.0	A0A0D2Q852_GOSRA; Uncharacterized protein
STRING	Gorai.002G178400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM18048	7	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18010.1	1e-19	WUSCHEL related homeobox 1