PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D01G1470
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 233aa    MW: 25758.3 Da    PI: 8.9264
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D01G1470genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.13e-1870124256
                  T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  rk+ ++tkeq + Lee F+ n++++ +++  LA +l+L  rqV vWFqNrRa+ k
  Gh_D01G1470  70 RKKLRLTKEQSRLLEESFRLNHTLNPKQKGALALQLKLRPRQVEVWFQNRRARSK 124
                  78889************************************************98 PP
2HD-ZIP_I/II117.38.9e-3870158190
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                  +kk+rl+keq++lLEesF+ +++L+p++K +la +L+l+prqv+vWFqnrRAR k+kq+E+++e+Lkr++ +l+e+n+rL++eveeLr +
  Gh_D01G1470  70 RKKLRLTKEQSRLLEESFRLNHTLNPKQKGALALQLKLRPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELR-A 158
                  69*************************************************************************************9.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.67E-1855127IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.4E-1755124IPR009057Homeodomain-like
PROSITE profilePS5007116.61766126IPR001356Homeobox domain
SMARTSM003895.2E-1668130IPR001356Homeobox domain
CDDcd000864.20E-1569127No hitNo description
PfamPF000461.4E-1570124IPR001356Homeobox domain
PROSITE patternPS000270101124IPR017970Homeobox, conserved site
SMARTSM003404.0E-22126169IPR003106Leucine zipper, homeobox-associated
PfamPF021837.5E-10126160IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MAVLPTGSSH LELTISVPGF ASSPSFPSSG DQGGCTVRDL DINQVPAEDE WITASMEDEE  60
ESCNNGAPPR KKLRLTKEQS RLLEESFRLN HTLNPKQKGA LALQLKLRPR QVEVWFQNRR  120
ARSKLKQTEM ECEYLKRWFG SLTEQNRRLQ REVEELRAMK VAPPTVISPH SCEPLPASTL  180
TMCPRCERVT TTTTAAIEKG SAKMTAATNR TATTLSSKVG TSALQSRPSS AAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118126RRARSKLKQ
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, nodes, internodes, flowers and embryo. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:17999151}.
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, nodes, internodes, flowers and embryo. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016706623.11e-171PREDICTED: homeobox-leucine zipper protein HOX3-like
SwissprotQ0JKX14e-84HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3
SwissprotQ9XH384e-84HOX3_ORYSI; Homeobox-leucine zipper protein HOX3
TrEMBLA0A1U8KZW21e-170A0A1U8KZW2_GOSHI; homeobox-leucine zipper protein HOX3-like
STRINGGorai.002G178800.11e-169(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48902747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01430.14e-69homeobox-leucine zipper protein 17