PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D01G1704
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 295aa    MW: 32762.2 Da    PI: 8.5975
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D01G1704genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2110.0013170192123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C+ C+k+F ++  L  H  +H
  Gh_D01G1704 170 FECSSCKKVFASHQALGGHWASH 192
                  89*************99999888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.027193IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.5987198IPR007087Zinc finger, C2H2
PfamPF139125.3E-77195IPR007087Zinc finger, C2H2
SuperFamilySSF576671.29E-67293No hitNo description
PROSITE patternPS0002807393IPR007087Zinc finger, C2H2
SuperFamilySSF576671.29E-6165192No hitNo description
PfamPF139123.9E-8169193IPR007087Zinc finger, C2H2
SMARTSM003550.58170192IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.014170197IPR007087Zinc finger, C2H2
PROSITE patternPS000280172192IPR007087Zinc finger, C2H2
SMARTSM003556.1225247IPR015880Zinc finger, C2H2-like
PfamPF139123.5E-8225249IPR007087Zinc finger, C2H2
PROSITE profilePS501578.787225252IPR007087Zinc finger, C2H2
PROSITE patternPS000280227247IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MNENIFSDNG FRFLSSVTQH NVTVNYDPKP RKKRTKVVKV DVGQFPTCSS TTVSRPKYTK  60
KPDPAAPKIT RPCTECGKKF WSWKALFGHM RCHPERQWRG INPPPNYCRP VKPASNVETL  120
MTEDDHEIAA SLLMLANGST ASESECGTSY RPGVKETEAF SQHLGANIRF ECSSCKKVFA  180
SHQALGGHWA SHKNVKGCFA ITRSEGYDVK DHSCDEDKMM MVLGHKCSIC WKLLSSGQAL  240
GGHKRYHWGK GDDEASSLNL LTAKEDCGLD LNLPPAPLQN DSYPSGLALD LRLSL
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in the germ cells following microspore division, increases during development and persists into mature pollen. {ECO:0000269|PubMed:24876252}.
UniprotTISSUE SPECIFICITY: Expressed exclusively in pollen. {ECO:0000269|PubMed:24876252}.
Functional Description ? help Back to Top
Source Description
UniProtMediates the regulation of male germ cell division by DUO1. {ECO:0000269|PubMed:24876252}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Activated by the transcription factor DUO1. {ECO:0000269|PubMed:21285328}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016708277.10.0PREDICTED: zinc finger protein ZAT3-like
SwissprotO654991e-78ZAT3_ARATH; Zinc finger protein ZAT3
TrEMBLA0A1U8L0Y70.0A0A1U8L0Y7_GOSHI; zinc finger protein ZAT3-like
STRINGGorai.002G206600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46191836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.14e-77C2H2-like zinc finger protein