PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D01G1788

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Protein Properties

Length: 217aa MW: 24823.3 Da PI: 10.2717

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D01G1788	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	39.3	1.1e-12	4	100	1	96
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEE.TTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltled.esgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgr.sef 90 f k+ltp d lk+ l++p + ++++ g + + l + +W + ++ rkk++ v+++GW++Fv ngL++gD ++F+ +++ ++ Gh_D01G1788 4 FSKKLTPTDCLKR--LSIPSRVLTSFpqfhG----G-HAVNLLVrYEAMEWPLVCTTRKKGRYkkPVISRGWRRFVLGNGLNVGDHLTFHKEEDdNSS 94 7899999888876..9*****99965432....3.345555525679**87665555779**********************77665666 PP ..EEEE CS B3 91 elvvkv 96 +l+++v Gh_D01G1788 95 SLHFRV 100 666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd10017	3.05E-15	3	100	No hit	No description
SuperFamily	SSF101936	1.08E-12	3	91	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	3.6E-14	3	99	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	1.2E-9	4	98	IPR003340	B3 DNA binding domain
SMART	SM01019	1.8E-7	4	101	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	9.46	16	104	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MELFSKKLTP TDCLKRLSIP SRVLTSFPQF HGGHAVNLLV RYEAMEWPLV CTTRKKGRYK 60 KPVISRGWRR FVLGNGLNVG DHLTFHKEED DNSSSLHFRV ELKKATNLST STTPCKSKSN 120 YSKERERQVL NKQFGAIVTI DHRKGDHKYL KHFGLSDGDK GKLANSNDQV NLRKNCNEKE 180 KAVVIREHWN LDQSIHGDDV NLNLSLGNQC TYGFRGL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012458573.1	2e-28	PREDICTED: uncharacterized protein LOC105779372
TrEMBL	A0A2P5Q9F6	1e-159	A0A2P5Q9F6_GOSBA; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM35794	2	2