PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D01G1806

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

LBD

Protein Properties

Length: 221aa MW: 24426.2 Da PI: 9.0973

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D01G1806	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	94.2	1.5e-29	4	108	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C++C+vlr++C+++C+++p++ p++q++++ +++k++G + +l+l++a pe+ r++++ sl+yeA+ r+ +PvyG+vg++++ ++ +q++++ Gh_D01G1806 4 SCNGCRVLRKGCSQNCIIRPCLqwiksPDSQANATLFLAKFYGLAGLLNLIEAGPENLRPAIFMSLLYEACGRVVNPVYGSVGMLWSRNWVECQAAVD 101 6***********************************************************************************************99 PP DUF260 94 lallkee 100 ++l +++ Gh_D01G1806 102 AVLKGSQ 108 9988776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	16.936	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.7E-23	4	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence Send to blast
MRMSCNGCRV LRKGCSQNCI IRPCLQWIKS PDSQANATLF LAKFYGLAGL LNLIEAGPEN 60 LRPAIFMSLL YEACGRVVNP VYGSVGMLWS RNWVECQAAV DAVLKGSQIT ETSSSESLAQ 120 QSISPLKTYD IRHVFKDPNT IDIDKVKSRT SFKRSATKSK RHVDSKEDAS MFSVETEEGS 180 LVTQTKKGPL LKLGNQTEEI ANIRLELTLG LAPATMQLPR L

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX585561	2e-77	JX585561.1 Gossypium hirsutum clone NBRI_GE19169 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016707139.1	1e-163	PREDICTED: LOB domain-containing protein 42-like
Swissprot	Q9CA30	1e-75	LBD42_ARATH; LOB domain-containing protein 42
TrEMBL	A0A1U8L292	1e-161	A0A1U8L292_GOSHI; LOB domain-containing protein 42-like
TrEMBL	A0A2P5S868	1e-162	A0A2P5S868_GOSBA; Uncharacterized protein
STRING	Gorai.002G217800.1	1e-162	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8463	26	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68510.1	1e-74	LOB domain-containing protein 42