PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D01G1830
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family G2-like
Protein Properties Length: 383aa    MW: 42593.6 Da    PI: 7.282
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D01G1830genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.41.2e-31212266155
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  k+r+rWt++LH++Fv++v++LGG+ekAtPk+il+lm+ +gLt+ hvkSHLQkYR+
  Gh_D01G1830 212 KTRIRWTQDLHDKFVDCVKRLGGAEKATPKAILKLMDTEGLTIFHVKSHLQKYRI 266
                  68****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.441209269IPR017930Myb domain
SuperFamilySSF466891.79E-16210266IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.0E-28211267IPR009057Homeodomain-like
TIGRFAMsTIGR015579.6E-24212267IPR006447Myb domain, plants
PfamPF002494.1E-8216265IPR001005SANT/Myb domain
PfamPF143791.2E-20294340IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MNTQKLDCQE NVEQNLGFSR DCNFEYIGFQ QPWNMATPMV DGTVSHHPKS SSSSTILVGF  60
QTPGAAFYAT ERCMGFPQYG SSSQGAATSF CSQYNKLCNS QLPSFHASGD NFSIQSLMKS  120
QIFCNQYEKS SDKSCTTTQD PSHDLSNLLG TNAATLPNHF SVPFRGNQDQ GAYCNSHGSS  180
PAKLSFFLQE KQSSPGSFSV SPSSTGTVLT SKTRIRWTQD LHDKFVDCVK RLGGAEKATP  240
KAILKLMDTE GLTIFHVKSH LQKYRIAKYM PDSAQGKSEK RNDLTQIDVK TGLHLTEALQ  300
LQLDVQRRLH EQLEIQRNLQ LQIEEQGRQL KMMIDQQQKT SESLLKNQDF NISPFDPSIS  360
FQDVFETSIA ESSGTGNISS KIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-22212269259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-22212269259Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A1e-22212269158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-22212269158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-22212269158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-22212269158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-22212269259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-22212269259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-22212269259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-22212269259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-22212269259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-22212269259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016706782.10.0PREDICTED: uncharacterized protein LOC107921445
TrEMBLA0A1U8KWI80.0A0A1U8KWI8_GOSHI; uncharacterized protein LOC107921445
TrEMBLA0A2P5RP540.0A0A2P5RP54_GOSBA; Uncharacterized protein
STRINGGorai.002G225400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54762748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.18e-74G2-like family protein