PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D01G1849

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 270aa MW: 30370.4 Da PI: 9.113

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D01G1849	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.5	0.00011	62	84	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C C+k+F++ + L H++ H Gh_D01G1849 62 FVCYRCPKRFTSTYALGGHQNAH 84 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.21E-5	60	89	No hit	No description
Gene3D	G3DSA:3.30.160.60	6.7E-4	60	88	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.032	62	89	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	64	84	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MENGNRNCKK LSTKHQVVVG RFAVAQNKPH LPLQHATLAP ETSNPITPSV SIETSQEITH 60 PFVCYRCPKR FTSTYALGGH QNAHKKERNE ELRLYNERRL ALSRQSTVPA DGRAKTKRAL 120 AVLTNQSSTP SYGPMVQFLP VVPLPGSMCM YAHPKSLVFV PAGFEYGQTR AGLNGKEVPY 180 EGSHRENEKH HPYNRPLDIK PMAMKLYPNE ERVFWPKAKE DNGCSKEYYS VSATNNVGPH 240 GEALINESRE DDDADKKCSK VEELDLTLRL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012468990.1	1e-169	PREDICTED: uncharacterized protein LOC105787089
TrEMBL	A0A0D2QAH1	1e-168	A0A0D2QAH1_GOSRA; Uncharacterized protein
STRING	Gorai.002G223400.1	1e-168	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM19978	4	5