PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D01G1935

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Trihelix

Protein Properties

Length: 442aa MW: 50723.7 Da PI: 6.7409

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D01G1935	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	76.2	5.1e-24	117	213	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85 +Wt+++v++Li+a+++++e++ ++ + k++W++vsk+++erg+++sp+qC++k+++lnkrykk+ ++ +++ +++++++ +++d + Gh_D01G1935 117 KWTDKMVRLLITAVSYIGEDMAGDCgggirrqfavlQTKGKWKSVSKVIAERGYHVSPQQCEDKFNDLNKRYKKLYDMLGRGiSCQVVENPALLDVI 213 7*******************99888899999999*******************************************9999999999888766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	9.5E-21	115	240	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 442 aa Download sequence Send to blast
MEGNLSRGII PGGSSFGGLD LQGSMMVHHR AQNPHNMHHH HHHPNPRRGT SAHPGIPLTA 60 GTMQNSDQPV TMIDYNKMEI GKCSVSDEDE PSFAEEGVDG HNDGNKGKKG SPWQRVKWTD 120 KMVRLLITAV SYIGEDMAGD CGGGIRRQFA VLQTKGKWKS VSKVIAERGY HVSPQQCEDK 180 FNDLNKRYKK LYDMLGRGIS CQVVENPALL DVIDYLTEKE KDDVRKILSS KHLFYEEMCS 240 YHNGNRLHLP HDLKLQRSLQ LALRRRDENE NDDVRRHQRD DLDDDDHDME TDDHDELEEN 300 HASHGDNRAI FGAPGGSTKR SRQSQVHEDA CFQKFLNSQD CNKSSFSSPP VAQADTNQVL 360 PDYSRAAWLQ KQWTESRSLQ LEEQKLQIQV DMLELEKQRF KWQRFSKKSD CELEKIRMGN 420 ERMKLENERM ALELKRKELA AD

Sequence ? help Back to Top

Protein Sequence Length: 442 aa Download sequence Send to blast

MEGNLSRGII PGGSSFGGLD LQGSMMVHHR AQNPHNMHHH HHHPNPRRGT SAHPGIPLTA  60
GTMQNSDQPV TMIDYNKMEI GKCSVSDEDE PSFAEEGVDG HNDGNKGKKG SPWQRVKWTD  120
KMVRLLITAV SYIGEDMAGD CGGGIRRQFA VLQTKGKWKS VSKVIAERGY HVSPQQCEDK  180
FNDLNKRYKK LYDMLGRGIS CQVVENPALL DVIDYLTEKE KDDVRKILSS KHLFYEEMCS  240
YHNGNRLHLP HDLKLQRSLQ LALRRRDENE NDDVRRHQRD DLDDDDHDME TDDHDELEEN  300
HASHGDNRAI FGAPGGSTKR SRQSQVHEDA CFQKFLNSQD CNKSSFSSPP VAQADTNQVL  360
PDYSRAAWLQ KQWTESRSLQ LEEQKLQIQV DMLELEKQRF KWQRFSKKSD CELEKIRMGN  420
ERMKLENERM ALELKRKELA AD

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.11056	0.0	boll

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012468067.1	0.0	PREDICTED: uncharacterized protein LOC105786254
TrEMBL	A0A0D2QHP8	0.0	A0A0D2QHP8_GOSRA; Uncharacterized protein
STRING	Gorai.002G231400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5042	27	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	1e-152	sequence-specific DNA binding transcription factors