PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D01G1964
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Dof
Protein Properties Length: 245aa    MW: 27397.2 Da    PI: 6.3457
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D01G1964genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof1183.6e-371368661
       zf-Dof  6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                  +cprC s+ntkfCyynnysl+qPryfCk+CrryWtkGG+lrnvPvGgg+rkn++ 
  Gh_D01G1964 13 PNCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRG 68
                 58***************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074789.0E-27167IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.6771367IPR003851Zinc finger, Dof-type
PfamPF027011.7E-311367IPR003851Zinc finger, Dof-type
PROSITE patternPS0136101551IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MERGWKPRME ISPNCPRCGS SNTKFCYYNN YSLTQPRYFC KGCRRYWTKG GSLRNVPVGG  60
GCRKNRRGKS LRLPTDGAQT KSLSCDSFRH SYASTESNSS SSMSDGSHID LALVYANFLS  120
NQQPENKSGF EVPELRTEFD PSLEFSRILN TNMASSIQLP EENGLDLSTE NHLSNNGQIY  180
CSGGNHGLPP LPGDDLPWPN SQSTMSPSLQ ATQEPVLEPE THDPNQLFGN WNPFDLYSDD  240
TFSRT
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00405DAPTransfer from AT3G52440Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016714856.10.0PREDICTED: dof zinc finger protein DOF3.5-like
TrEMBLA0A1U8LJS30.0A0A1U8LJS3_GOSHI; dof zinc finger protein DOF3.5-like
TrEMBLA0A2P5X6N80.0A0A2P5X6N8_GOSBA; Uncharacterized protein
STRINGGorai.002G234700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91412238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52440.18e-44Dof family protein