PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D01G2042

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HD-ZIP

Protein Properties

Length: 230aa MW: 26625.8 Da PI: 7.7004

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D01G2042	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	63.1	4.1e-20	67	120	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ ++t++ql+ Le+ F+++++++ +++ +L+k+lgL+ rq+ vWFqNrRa++k Gh_D01G2042 67 KKKRLTSDQLDSLERSFQEENKLDPDRKMKLSKELGLQPRQIAVWFQNRRARWK 120 66779************************************************9 PP
2	HD-ZIP_I/II	121.9	3.1e-39	66	157	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rl+++q+ +LE+sF+ee+kL+p+rK++l++eLglqprq+avWFqnrRAR+k+kqlE+ y++Lk++yd ++ e+++L++ev +L+ l+ Gh_D01G2042 66 NKKKRLTSDQLDSLERSFQEENKLDPDRKMKLSKELGLQPRQIAVWFQNRRARWKAKQLEHSYNTLKHEYDIISIEKQKLQDEVMKLKGILR 157 59*************************************************************************************97665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.99E-20	53	124	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.783	62	122	IPR001356	Homeobox domain
SMART	SM00389	3.8E-19	64	126	IPR001356	Homeobox domain
Pfam	PF00046	1.9E-17	67	120	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.1E-21	68	129	IPR009057	Homeodomain-like
CDD	cd00086	3.55E-17	70	123	No hit	No description
PRINTS	PR00031	3.6E-5	93	102	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	97	120	IPR017970	Homeobox, conserved site
PRINTS	PR00031	3.6E-5	102	118	IPR000047	Helix-turn-helix motif
Pfam	PF02183	8.1E-8	122	156	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MDWDGTIRPF ISRLEPSLNF PSNYNYNQYP EGVEDMNNQG FEEAGNGLVP DLNMNGFMNN 60 GKGKNNKKKR LTSDQLDSLE RSFQEENKLD PDRKMKLSKE LGLQPRQIAV WFQNRRARWK 120 AKQLEHSYNT LKHEYDIISI EKQKLQDEVM KLKGILREQV TRNQVSTVYT EISGEETVES 180 TSIRSSNKPK IAGNNHHPHP VAACNYLFNV DEYNPVSSPY WGTVQLPSYP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	114	122	RRARWKAKQ

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Widely expressed. {ECO:0000269\|PubMed:16055682}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX584376	3e-42	JX584376.1 Gossypium hirsutum clone NBRI_GE17666 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017622718.1	1e-129	PREDICTED: homeobox-leucine zipper protein ATHB-22-like
Swissprot	Q9LZR0	2e-47	ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBL	A0A1L6KYF3	1e-128	A0A1L6KYF3_GOSTH; HD-Zip I TF
STRING	Gorai.002G244200.1	1e-126	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1660	28	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03790.1	2e-47	homeobox 51

Publications ? help Back to Top
Andres RJ, et al. Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.). Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66 [PMID:27999177] Vuolo F, et al. LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication. Genes Dev., 2018. 32(21-22): p. 1361-1366 [PMID:30366902]