PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D01G2242

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

G2-like

Protein Properties

Length: 334aa MW: 37981.1 Da PI: 8.5976

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D01G2242	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.6	2.5e-32	58	111	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH rFv+ave+LGG+++AtPk +l+lm++kgL+++hvkSHLQ+YR+ Gh_D01G2242 58 PRLRWTPDLHLRFVHAVERLGGQDRATPKLVLQLMNIKGLSIAHVKSHLQMYRS 111 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.922	54	114	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	6.3E-30	54	112	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.48E-15	57	112	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.6E-23	58	113	IPR006447	Myb domain, plants
Pfam	PF00249	1.3E-9	59	110	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
MMEENSGTGC SKTVKAETES EENEGESRPK NGGSSSNSTV EENEKKPSVR PYVRSKLPRL 60 RWTPDLHLRF VHAVERLGGQ DRATPKLVLQ LMNIKGLSIA HVKSHLQMYR SKKIDDSGQV 120 ISDHRHLVES GDRNIYNLSQ LPMLQGYSNL LHHHHHHHHH HHHQGDSSSS FYRYGDASWG 180 NREYSMSRPY TSTSFINESR PGLHRTVTEK IFSSNWASYD FKCNQVQPRL GPIETSSMSQ 240 NTSLSIHNSN LISQDLKSTK RKTFDCDLDL DLSLRITAKE DKQQNSEQDD VVSELSLSLY 300 SPSSSSSKLS RLKSEEDHCT KKNARRVSTL DLTI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-16	59	113	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-16	59	113	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-16	59	113	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-16	59	113	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-16	59	113	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-16	59	113	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-16	59	113	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-16	59	113	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-16	59	113	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-16	59	113	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-16	59	113	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-16	59	113	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GQ394941	1e-135	GQ394941.1 Gossypium hirsutum cultivar Delta Opal clone MONCS1964 SSR marker DPL0302 genomic sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016727690.1	0.0	PREDICTED: probable transcription factor RL9
Refseq	XP_016727691.1	0.0	PREDICTED: probable transcription factor RL9
TrEMBL	A0A1U8MLJ0	0.0	A0A1U8MLJ0_GOSHI; probable transcription factor RL9
STRING	Gorai.002G265400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM363	28	184

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	5e-64	G2-like family protein