PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D01G2271
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 468aa    MW: 49610.3 Da    PI: 6.6262
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D01G2271genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH375.6e-124368227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                 +++ C +++rtG+C yG++C+F+H++
  Gh_D01G2271 43 DEADCIYYLRTGFCGYGSKCRFNHPR 68
                 6799********************96 PP
2zf-CCCH38.52e-1290114327
                  S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                  ++ C++++rtG Ck+G++Ck++H++
  Gh_D01G2271  90 QPVCQYYMRTGACKFGASCKYHHPK 114
                  689********************96 PP
3zf-CCCH33.47.4e-11135159226
                  -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                  ++++C+++ +tG+Ck+G +CkF+H+
  Gh_D01G2271 135 GEKECSYYVKTGQCKFGTTCKFHHP 159
                  7899********************8 PP
4zf-CCCH39.21.2e-12291317127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  +++++C+++++tG CkyG++C+++H+p
  Gh_D01G2271 291 PGQPECQYYMKTGRCKYGSSCRYHHPP 317
                  5789*********************97 PP
5zf-CCCH29.51.3e-09339363327
                  S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                   ++C ++ + G Ck+G+ C+F H++
  Gh_D01G2271 339 APPCTHYTQRGMCKFGAACRFDHPM 363
                  689********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003567.4E-54168IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.3244169IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-94368IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-64470IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-54768IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.55487115IPR000571Zinc finger, CCCH-type
SMARTSM003563.8E-787114IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-1090114IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-690114IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.6E-592113IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.521133161IPR000571Zinc finger, CCCH-type
SMARTSM003563.5E-5133160IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-8135159IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-6135161IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.7E-4139158IPR000571Zinc finger, CCCH-type
SMARTSM003563.0E-7290317IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.131290318IPR000571Zinc finger, CCCH-type
PfamPF006427.8E-10292317IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-6294318IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-5296317IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.727336364IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-6336363IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-6339363IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5340366IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-4341361IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MERDPESDPQ PEWNTQGPET GLEEPVCRLG LEGGSESYPE RPDEADCIYY LRTGFCGYGS  60
KCRFNHPRDR AGVMGVGRGG VGEYPERVGQ PVCQYYMRTG ACKFGASCKY HHPKQGGGSV  120
SSVPLNYYGY PLRPGEKECS YYVKTGQCKF GTTCKFHHPA PPAMQVPAPS PAPQVAPAPT  180
PMPAPTMYST VQSPSGPSSQ QYGVVMARPP LMPGSYVQGP YGPLLLSQGV PSWNPYPGPV  240
GYGTQPTVPS SSTFGATPLS PSATAYTGSH QFVPSSFESN IQEEVSFPER PGQPECQYYM  300
KTGRCKYGSS CRYHHPPEVF APKADVVLSP LGLPLRPGAP PCTHYTQRGM CKFGAACRFD  360
HPMGTLSYSP SASSLADMPV APYPVGTTIG TLAPSSSSSE LRPELLSGSS KDPAPAMISS  420
SVSASSEPVG SVFSEGAPVP HSTTQQSSWS SAPSTGGGSD DDEPHSSS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.77090.0boll| ovule
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016724289.10.0PREDICTED: zinc finger CCCH domain-containing protein 34-like
SwissprotQ6NPN31e-151C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBLA0A1U8MFF30.0A0A1U8MFF3_GOSHI; zinc finger CCCH domain-containing protein 34-like
STRINGGorai.002G027000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17792786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06410.11e-113C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]