PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D01G2326

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

YABBY

Protein Properties

Length: 182aa MW: 20604.3 Da PI: 8.7621

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D01G2326	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	178.2	4.8e-55	4	159	2	170
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsse 99 +++s++eq+Cy+ Cn Cn ilav+vP +slf++vtvrCG C++l svnla + q +a ++ ++ + ++e ++ +++ +++ ++++ Gh_D01G2326 4 SHNSAPEQLCYIPCNLCNIILAVNVPCNSLFETVTVRCGQCSNLCSVNLAASFQSRAGKDV--------QVPNYTSSEYRIDLGSSSRCKNKLPKRAT 93 68899********************************************9999999885........33344444444433333332222223333 PP YABBY 100 klsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++++ ++e v+rPP+kr r+Ps yn+fikeeiqrik +nPdi+hreafs+aaknWa fP+ihfgl Gh_D01G2326 94 TINTTTQER-----VVNRPPDKRHRAPSLYNQFIKEEIQRIKLNNPDITHREAFSTAAKNWARFPHIHFGL 159 333333333.....469**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.7E-62	8	159	IPR006780	YABBY protein
SuperFamily	SSF47095	1.44E-6	98	152	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence Send to blast
MSSSHNSAPE QLCYIPCNLC NIILAVNVPC NSLFETVTVR CGQCSNLCSV NLAASFQSRA 60 GKDVQVPNYT SSEYRIDLGS SSRCKNKLPK RATTINTTTQ ERVVNRPPDK RHRAPSLYNQ 120 FIKEEIQRIK LNNPDITHRE AFSTAAKNWA RFPHIHFGLM LETDNQPKLN DDSTEPFHQL 180 LK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.21659	0.0	boll

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ526781	6e-37	HQ526781.1 Gossypium herbaceum clone NBRI_A_1939 simple sequence repeat marker, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012455973.1	1e-135	PREDICTED: axial regulator YABBY 5-like isoform X1
Refseq	XP_012455982.1	1e-135	PREDICTED: axial regulator YABBY 5-like isoform X1
Refseq	XP_012455990.1	1e-135	PREDICTED: axial regulator YABBY 5-like isoform X1
Refseq	XP_016732275.1	1e-135	PREDICTED: axial regulator YABBY 5-like
Refseq	XP_016732276.1	1e-135	PREDICTED: axial regulator YABBY 5-like
Swissprot	Q8GW46	2e-77	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	A0A0D2Q5K0	1e-133	A0A0D2Q5K0_GOSRA; Uncharacterized protein
TrEMBL	A0A1U8MZQ2	1e-133	A0A1U8MZQ2_GOSHI; axial regulator YABBY 5-like
STRING	Gorai.002G054200.1	1e-134	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5538	26	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	9e-80	YABBY family protein

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]